View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_high_20 (Length: 257)
Name: NF2681_high_20
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 37217668 - 37217893
Alignment:
| Q |
1 |
attcagattgcattgaatattaattactagccttttcaaataattttttagagtacgtagtttatgtagtttgttttgataaaaaagtggagtcatatat |
100 |
Q |
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| T |
37217668 |
attcagattgcattgaatatta----ctagccttttcaaacaattttttagagtacgtagtttatgtagtttgttttgataaaaaagtggagtcatatat |
37217763 |
T |
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| Q |
101 |
tt-taacggtaagttattcaaaataaatacctttaaaatttagtagttataattctgtaggtcttatttctcaaaatggactcaagcaaataaatgtact |
199 |
Q |
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| T |
37217764 |
ttctaacagtaagttattcaaaataaatacctttaaaattta--------------gtaggtcttatttctcaaaatggactcaagcaaataaatgtact |
37217849 |
T |
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| Q |
200 |
tataaatttggttttttggactagagtcaaagttcctatatatg |
243 |
Q |
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| T |
37217850 |
tataaatttggttttttggactagagtcaaagttcctatatatg |
37217893 |
T |
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