View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2681_high_21 (Length: 256)
Name: NF2681_high_21
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_high_21 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 6648204 - 6647949
Alignment:
| Q |
1 |
aattctgatactagtgctataaccgctatttcgcaacactggtttatatacaacttgattaactgaagcacgcttgatgacacaggatggatatctatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6648204 |
aattctgatactagtgctataaccgctatttcgcaacactggtttatatacaacttgattaactgaagcacgcttgatgacacaggatggatatctatcg |
6648105 |
T |
|
| Q |
101 |
gctcattggatggattcctttattcattttcgccaaccggaatactcaagaaattctcaagaaaaaatactgagaactctattgctcaagttggtccatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6648104 |
gctcattggatggattcctttattcattttcgccaaccggaatactcaagaaattctcaagaaaaaatactgagaactctattgctcaagttggtccatt |
6648005 |
T |
|
| Q |
201 |
tcttgattgttctggatttgctgtctacagttcacagatagagatggaaggaaaag |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6648004 |
tcttgattgttctggatttgctgtctacagttcacagatagagatggaaggaaaag |
6647949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University