View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_high_25 (Length: 215)
Name: NF2681_high_25
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 39840996 - 39841196
Alignment:
| Q |
1 |
ttaaaaacattatcagcacattcttcttattctttttgtaaactcgttctcaaatttcccctgtgatgtgtttgcatatattaaaaacggaaaagttaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39840996 |
ttaaaaacattatcagcacattcttcttattctttttgtaaactcgttctcaaatttcccctgtaatgtgtttgcatatattaaaaacggaaaagttaac |
39841095 |
T |
|
| Q |
101 |
atccccctatcatggggcttttagccatatacccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttaataagtacata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39841096 |
atccccctatcatggggcttttagccatatacccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttagtaagtacata |
39841195 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
39841196 |
t |
39841196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 35162825 - 35163027
Alignment:
| Q |
1 |
ttaaaaacattatcagcacattcttcttattctttttgtaaactcgttctcaaatttcccctgtgatgtgtttgcatatattaaaaacggaaaagttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
35162825 |
ttaaaaacattatcagcacattcttcttattctttttgtaaactcgttttcaaatttcccctgtaatgtgtttgtatatattaaaaacggaaaagttaac |
35162924 |
T |
|
| Q |
101 |
at-ccccctatcatggggcttttagccatatacccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttaataagtacat |
199 |
Q |
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|| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35162925 |
atcccccctaccatggggcttttagccatattcccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttaataagtacat |
35163024 |
T |
|
| Q |
200 |
att |
202 |
Q |
| |
|
||| |
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|
| T |
35163025 |
att |
35163027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 39846046 - 39846248
Alignment:
| Q |
1 |
ttaaaaacattatcagcacattcttcttattctttttgtaaactcgttctcaaatttcccctgtgatgtgtttgcatatattaaaaacggaaaagttaac |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
39846046 |
ttaataacattatcagcacattcttcttattctttttgtaaattcgttctcaaatttcccctataatgtgtttgcatatattaaaaacggaaaagttaac |
39846145 |
T |
|
| Q |
101 |
atcccc-ctatcatggggcttttagccatatacccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttaataagtacat |
199 |
Q |
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|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39846146 |
atcccccctatcatggggcttttagccatattcccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttaataagtacat |
39846245 |
T |
|
| Q |
200 |
att |
202 |
Q |
| |
|
||| |
|
|
| T |
39846246 |
att |
39846248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 44797295 - 44797093
Alignment:
| Q |
1 |
ttaaaaacattatcagcacattcttcttattctttttgtaaactcgttctcaaatttcccctgtgatgtgtttgcatatattaaaaacggaaaagttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||| | ||||||||||||| ||||||||||| |
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|
| T |
44797295 |
ttaaaaacattatcagcacattcttcttgttctttttgtaaacttgttttcaaatttcccctgtaatgtgttcgtatatattaaaaacagaaaagttaac |
44797196 |
T |
|
| Q |
101 |
atccccc-tatcatggggcttttagccatatacccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttaataagtacat |
199 |
Q |
| |
|
||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44797195 |
atcccccctaccatggggcttttagccatattcccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttaataagtacat |
44797096 |
T |
|
| Q |
200 |
att |
202 |
Q |
| |
|
||| |
|
|
| T |
44797095 |
att |
44797093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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