View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_high_7 (Length: 417)
Name: NF2681_high_7
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 3433802 - 3434186
Alignment:
| Q |
18 |
cctaaagcattagggttatggtttctcttgcttatatgtttcattttctaattcaatataaaaattttgctcgagaggaatttaatgcgagacttctgac |
117 |
Q |
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| T |
3433802 |
cctaaagcatcagggttatggtttctcttgcttatatgtttcattttctaattcaatgtgaaaattttgctcgagaggaattcaatacgagacttctaac |
3433901 |
T |
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| Q |
118 |
tcacattaactacaaaataatcaatataacatttttatgtagtaatctatatccaaattttgtttatcaattatcatgaggtcttacttgtaacacaaag |
217 |
Q |
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| T |
3433902 |
tcacattaactacaaaataatcaatttaacatttttatgtagtaatctatatccaaattttgtttatcaattatcatgaggtcttacttgtaacacaaag |
3434001 |
T |
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| Q |
218 |
agggatgaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatccttgcttgaggaacttgaaatatttgcattgctatgaggta |
317 |
Q |
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| T |
3434002 |
agggatgaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatccttgcttgaggaacttgtaatatttgcattactatgaggta |
3434101 |
T |
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| Q |
318 |
tatatttagtccacatcaactccaaaactggtcctttgtacaaggtcatcaacattgccccagccacagttaaaatggttccaat |
402 |
Q |
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| T |
3434102 |
tatatttagtccacatcaactccaaaactggtcctttgtacaaggtcatcaacattgccccagccacagttaaaatggttccaat |
3434186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 180 - 402
Target Start/End: Original strand, 3374932 - 3375163
Alignment:
| Q |
180 |
tttatcaattatcatgaggtcttacttgtaacacaaagagggatgaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatcctt |
279 |
Q |
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| T |
3374932 |
tttatcaattatcatgagatcttacttgtaaaacaaagagtgatgcccatgcaatggtagaaatgattagtaaaatggaacctaaaaaccaattattctt |
3375031 |
T |
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| Q |
280 |
gcttgaggaacttgaaatat---ttgcattg------ctatgaggtatatatttagtccacatcaactccaaaactggtcctttgtacaaggtcatcaac |
370 |
Q |
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| T |
3375032 |
gcttgaggatcttgtgatgtttgttgcattgcttttactatgaaatatatgtccagtccaaaataactccacaataggacctttgtataaggtcatcaac |
3375131 |
T |
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| Q |
371 |
attgccccagccacagttaaaatggttccaat |
402 |
Q |
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| T |
3375132 |
attgccccagccacagttaaaatggttccaat |
3375163 |
T |
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