View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2681_low_1 (Length: 728)

Name: NF2681_low_1
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2681_low_1
NF2681_low_1
[»] chr1 (2 HSPs)
chr1 (18-721)||(41659216-41659922)
chr1 (652-709)||(41658252-41658309)


Alignment Details
Target: chr1 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 18 - 721
Target Start/End: Complemental strand, 41659922 - 41659216
Alignment:
Q  18 cacactacttactaaaatcaatgtctaaatcaatcccacaatagtaagatcaaattgatattaggcggttttgaattatttatacaaatggggaaaccct 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41659922 cacactacttactaaaatcaatgtctaaatcaatgccacaatagtaagatcaaattgatattaggcggttttgaattatttatacaaatggggaaaccct 41659823  T
Q  118 tggaagattgttaggtttttgacccatgacaatgttctcttttatttttcctaagaaaaccgctaaatctgactattttacaagcgtatc---------- 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  41659822 tggaagattgttaggtttttgacccatgacaatgttctcttttatttttcctaagaaaaccgctaaatctgactattttacaagcgtatcttagagcata 41659723  T
Q  208 --aggtcataaggtaggttttatttcagctagactttgaaatttagaaatttctttgaaagagtgagtg--ataattttgattttttgaagttgaactct 303  Q
      | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||||||||||    
T  41659722 tcaagtcataaggtaggttttatttcagctagactttgaaatttagaaattcctttgaaagagtgagtgtgataattttgattttt-gaagttgaactct 41659624  T
Q  304 ttattagtctttaacaccttaaagccttagacctttttatagtgattagttcaacattgtaacacaagtatccagttttgatagggataatcactgtgct 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41659623 ttattagtctttaacaccttaaagccttagacctttttatagtgattagttcaacattgtaacacaagtatccagtcttgatagggataatcactgtgct 41659524  T
Q  404 attatgacaatagtaggctatatcatttctacatctatactatactctgtagttttcaccttcagacttgagagatttatggtcatgtttattgaattct 503  Q
    |||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41659523 attatgacaatagtaggctatatcatttctacatctatact-----ctgtagttttcaccttcagacttgagagatttatggccatgtttattgaattct 41659429  T
Q  504 tttgttcttctcaacttttcccgcttcttgttttcatgattttccaaatatttgattatgcgagattattattgaatcttggttatttttacttcatatt 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41659428 tttgttcttctcaacttttcccgcttcttgttttcatgattttccaaatatttgattatgcgagattattattgaatcttggttatttttacttcatatt 41659329  T
Q  604 caagtaaaataatacatagacttcaagaaatccatgaacactgaactgaaaaggttagtagttttagaaattaggttagtgtaccaatttggttttacta 703  Q
    |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41659328 caagtaaaataatacatagacttcaagaaatccatgaacac-----tgaaaaggttagtagttttagaatttaggttagtgtaccaatttggttttacta 41659234  T
Q  704 aactactttgtctttagt 721  Q
    ||||||||||||||||||    
T  41659233 aactactttgtctttagt 41659216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 652 - 709
Target Start/End: Complemental strand, 41658309 - 41658252
Alignment:
Q  652 aaaaggttagtagttttagaaattaggttagtgtaccaatttggttttactaaactac 709  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||    
T  41658309 aaaaggttagtagattcagaaattaggttagtgtgccaatttggttgtactaaactac 41658252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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