View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_low_11 (Length: 361)
Name: NF2681_low_11
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_11 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 16803501 - 16803861
Alignment:
| Q |
1 |
tttccaccaatcgaagaattcaattgggatataaaagacaaaggtccacgtccaagaccaatatttccggatacatatccctcaagtggacccttatttc |
100 |
Q |
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| T |
16803501 |
tttccaccaatcgaagaattcaattgggatataaaagacaaaggtccacgtccaagaccaatatttccggatacatatccctcaagtggacccttatttc |
16803600 |
T |
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| Q |
101 |
tatggccgcatcctattacaatatttttaaatgagataggagggtcattattagagttcaaagtaagagtgtctatactaagatctccttgggaatatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803601 |
tatggccgcatcctattacaatatttttaaatgagataggagtgtcattattagagttcaaagtaagagtgtctatactaagatctccttgggaatatgc |
16803700 |
T |
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| Q |
201 |
ctcaccaccatatgtaaaactatattcacatacctttttatcatcggaagagcaatgcgtattttctacatttttgcatttgggagaagagcaaggaatg |
300 |
Q |
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| T |
16803701 |
ctcaccaccatatgtaaaactatattcacatacctttttatcatcggaagagcaatgcgtattttctacatttttgcatttgggagaagagcaaggaatg |
16803800 |
T |
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| Q |
301 |
gttttataggttgaagattttgaagggtcaaacattggtgatgttgtgttgaaacatggtt |
361 |
Q |
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| T |
16803801 |
gttttataggttgaagattttgaagggtcaaacattggtgatgttgtgttgaaacatggtt |
16803861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 19573742 - 19573388
Alignment:
| Q |
1 |
tttccaccaatcgaagaattcaattgggatataaaagacaaaggtccacgtccaagaccaatatttccggatacatatccctcaagtggacccttatttc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| ||||||||||| || ||||| ||||| | ||| |||| ||||| |
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| T |
19573742 |
tttccaccaattgaagaattcaattgggatataaaagacaaaggcccgcgtgcaaggccaatatttcctgagacatacccctctaatggcccctgatttc |
19573643 |
T |
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| Q |
101 |
tatggccgcatcctattacaatatttttaaatgagataggagggtcattattagagttcaaagtaagagtgtctatactaagatctccttgggaatatgc |
200 |
Q |
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|||| || ||||| || ||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||| | || |||||||||||| ||||| |
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| T |
19573642 |
tatgcccacatccaatcacaatatttttgaatgagataggagtgccattgttagagttcaaagtaagagtgtcgacaccaagatctccttgcgaata--- |
19573546 |
T |
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| Q |
201 |
ctcaccaccatatgtaaaactatattcacatacctttttatcatcggaagagcaatgcgtattttctacatttttgcatttgggagaagagcaaggaatg |
300 |
Q |
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| T |
19573545 |
cccatcaccatatgtatatttatattcacatatcttttaatctttggaagagcaatgccca---tctgcatttttgcatatgggagaagtgcatggaatg |
19573449 |
T |
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| Q |
301 |
gttttataggttgaagattttgaagggtcaaacattggtgatgttgtgttgaaacatggtt |
361 |
Q |
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| T |
19573448 |
gttttgtaggttgatgattttgaagggtgaaacattggtgatgtttggtttaaacatggtt |
19573388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 15421 - 15546
Alignment:
| Q |
236 |
ttttatcatcggaagagcaatgcgtattttctacatttttgcatttgggagaagagcaaggaatggttttataggttgaagattttgaagggtcaaacat |
335 |
Q |
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|||||| || |||||||||||| ||||||| | | ||| ||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| |
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| T |
15421 |
ttttatgattggaagagcaatggctattttcgaaacgtttacatgtgggagaagagcaatgaatgtttttataggttgaagattttgaagggttaaacat |
15520 |
T |
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| Q |
336 |
tggtgatgttgtgttgaaacatggtt |
361 |
Q |
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| T |
15521 |
tggagatgtttggtttaaacatggtt |
15546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 361
Target Start/End: Complemental strand, 8894231 - 8894153
Alignment:
| Q |
283 |
ggagaagagcaaggaatggttttataggttgaagattttgaagggtcaaacattggtgatgttgtgttgaaacatggtt |
361 |
Q |
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|||||||||||| | ||| |||| |||||||| ||||||||||||| ||| || || |||||| ||| |||||||||| |
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| T |
8894231 |
ggagaagagcaacggatgtttttgtaggttgatgattttgaagggttaaatatcggagatgtttggtttaaacatggtt |
8894153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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