View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_low_14 (Length: 328)
Name: NF2681_low_14
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_14 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 46129827 - 46129509
Alignment:
| Q |
11 |
cagagatgtgtcaataaatgttcaaa-tttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacacatacacctatagattatata |
109 |
Q |
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| T |
46129827 |
cagagatgtgtcggcaaatgttcaaaatttggttaaaaattaagaacttatgtgcaccacatcatgatttaggaaaacacatacgcctatagattatata |
46129728 |
T |
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| Q |
110 |
atgtgcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaaacgagtaaaacacccc |
209 |
Q |
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| T |
46129727 |
atgtgtaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaaacgagtaaaacacccc |
46129628 |
T |
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| Q |
210 |
aggtaaaatacaacgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgaccgtaagtact |
309 |
Q |
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| T |
46129627 |
aggtaaaatacaaccactacattcataccccctgacagtagctttccaaactgagtagctgcttccagttgtgcagcagggtcgtccgacagtaagtcct |
46129528 |
T |
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| Q |
310 |
ttttcattgcaagaacggt |
328 |
Q |
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| T |
46129527 |
ttttcattgcaagaacggt |
46129509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 46702608 - 46702302
Alignment:
| Q |
14 |
agatgtgtcaataaatgttcaaatttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacacatacacctatagattatataatgt |
113 |
Q |
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| T |
46702608 |
agatgtgtcaataaatgttcaaatttggttaacaattaagaacttatgtgcactacatcatgatttaggaaaacacatacacctatagattacataacgt |
46702509 |
T |
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| Q |
114 |
gcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcat-aacataagaaacgagtaaaacaccccagg |
212 |
Q |
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| T |
46702508 |
gtaacactttgttttattaaaagtaatctagatgaggacattacatagtggcatcgt-taatttaggcataaacataagaaacgagtattacaccccaga |
46702410 |
T |
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| Q |
213 |
taaaatacaacgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgaccgtaagtactttt |
312 |
Q |
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| T |
46702409 |
taaaatataatgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgacagtaagccctgtt |
46702310 |
T |
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| Q |
313 |
tcattgca |
320 |
Q |
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| T |
46702309 |
tcattgca |
46702302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 46123805 - 46123516
Alignment:
| Q |
11 |
cagagatgtgtcaataaatgttcaaa-tttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacaca--tacacctatagattata |
107 |
Q |
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|||||||||||| ||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||| ||||||| ||||| || ||||| |
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| T |
46123805 |
cagagatgtgtcggcaaatgttcaaaatttggttaaaaattaagaacttatgagaactacatcatgatttagggaaacacacatacactactatgttata |
46123706 |
T |
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| Q |
108 |
ta--atgtgcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaa-acgagtaaaac |
204 |
Q |
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| T |
46123705 |
tacaatgtataatactttttttttttaaaagtaaactcgaggaggacgttacacagtggtatcatataatttaggcatcacattagaagaagagtattac |
46123606 |
T |
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| Q |
205 |
accccaggtaaaatacaacgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgt |
294 |
Q |
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| T |
46123605 |
atcccaaataaaatataatgattacattcataccccctgatagtagctttccaaactgagtagttgcttcaagttgtgcagcagggtcgt |
46123516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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