View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_low_16 (Length: 308)
Name: NF2681_low_16
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 39300229 - 39299943
Alignment:
| Q |
18 |
tgctgaggaacgtccttatataaaaacctacaggagctctgatatatcaccatgcagttggttttctgtggcatggtaggtttcaaaatgtacatctttt |
117 |
Q |
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| T |
39300229 |
tgctgaggagcgtccttatataaaaacctacaggagctctgatatatcaccatgcagttggttttctgtggcatggtaggtttcaaaatgtacatctttt |
39300130 |
T |
|
| Q |
118 |
gccgtcatttattttctaaatttttctttgtccgtctaacaaatcaaacttgtgttcaggtatccaatttatgggatccgcaccaaaccaacgcttaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39300129 |
gccgtcatttattttctaaatttttctttgtccgtctaacaaatcaaacttgtgttcaggtatccaatttatgggatccgcgccaaaccaacgcttaaaa |
39300030 |
T |
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| Q |
218 |
acataaaagcagcatttctaacctttcacaatctatctgctcactttgaaagtatatgatcatctgtttcattctaacatttctaaa |
304 |
Q |
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| T |
39300029 |
acataaaagcagcatttctaacctttcacaatctatctgctcactttaaaagtatatgatcatctgtttcattctaacattactaaa |
39299943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 39308045 - 39307878
Alignment:
| Q |
36 |
tataaaaacctacaggagctctgatatatcaccatgcagttggttttctgtggcatggtaggtttcaaaatgtacatcttttgccgtc-------attta |
128 |
Q |
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| T |
39308045 |
tataaaaaactataggagctctgatatatcaccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattga |
39307946 |
T |
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| Q |
129 |
ttttctaaatttttctttgtccgtctaacaaatcaaacttgtgttcaggtatccaatttatgggatcc |
196 |
Q |
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| T |
39307945 |
ttttctaaatttttctttgtccgtctaacaaatggaacttgtgtttaggtatccgatttacgggatcc |
39307878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 26563876 - 26563756
Alignment:
| Q |
65 |
caccatgcagttggttttctgtggcatggtaggtttcaaaatgtacatcttttgccgtc---atttattttctaaatttttctttgtccgtctaacaaat |
161 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |
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| T |
26563876 |
caccatgtagttggttttctttggcatggtaggtttcaaaatgtacatcttttgccgtcataatttatttccaaaatttttctttgtccgtctaacaaat |
26563777 |
T |
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| Q |
162 |
caaacttgtgttcaggtatcc |
182 |
Q |
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| T |
26563776 |
caaacttgcgtttaggtatcc |
26563756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 254
Target Start/End: Complemental strand, 26555926 - 26555713
Alignment:
| Q |
39 |
aaaaacctacaggagctctgatatatcaccatgcagttggttttctgtggcatggtaggtttcaaaatgtacatcttttgccgtc---atttattttcta |
135 |
Q |
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||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||| || |||||||| || |
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| T |
26555926 |
aaaaaactataggagcagtgatatatcaccatgtagttggttttctgtggcatggtaggtttctaaacatacatattttgccatcataatttatttctta |
26555827 |
T |
|
| Q |
136 |
aatttttctttgtccgtctaacaaatcaaacttgtgttcaggtatccaatttatgggatccgcaccaaaccaacgcttaaaaacataaaagcagcatttc |
235 |
Q |
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|||||||| |||| ||||||||||| |||||||||| ||||||| ||||| | ||||| | | |||||||||||||| |||| |||||||||| |
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| T |
26555826 |
aatttttc--tgtctttctaacaaatcgaacttgtgtttaggtatctgatttacgagatcc---ctggatcaacgcttaaaaacttaaatgcagcatttc |
26555732 |
T |
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| Q |
236 |
taacctttcacaatctatc |
254 |
Q |
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| |||||| | |||||||| |
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| T |
26555731 |
tcacctttaataatctatc |
26555713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 26554823 - 26554946
Alignment:
| Q |
75 |
ttggttttctgtggcatggtaggtttcaaaatgtacatc-ttttgccgtc---atttattttctaaatttttctttgtccgtctaacaaatcaaacttgt |
170 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||| ||||||||||||| || ||| | |||||| || |||| |
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| T |
26554823 |
ttggttttctgtggcatggtaggtttcgaaatgtacatcttttttccgtcatgatttatttcctaaatttttcttagttcgtttgacaaattgaa-ttgt |
26554921 |
T |
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| Q |
171 |
gttcaggtatccaatttatgggatc |
195 |
Q |
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||| |||||||| ||||||| |||| |
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| T |
26554922 |
gtttaggtatccgatttatgtgatc |
26554946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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