View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_low_17 (Length: 300)
Name: NF2681_low_17
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 42714889 - 42715160
Alignment:
| Q |
16 |
atagttctttccattggtccaaattaactttccaaagacacaatcagacttatccttactttgcagcttgaaggttaatgtaactctgaactccttcttt |
115 |
Q |
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| T |
42714889 |
atagttctttccattggtccaaattaactttccaaagacataatcagacttatccttactttgcagcttgaaggttaatgtaactctgaactccttcttt |
42714988 |
T |
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| Q |
116 |
tcgcccttttgattaaagctcagtgtcttaggctcaacataaattacatattccgggggagcttggatttgtgcggtatatgtgcttggagaccccacgt |
215 |
Q |
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| T |
42714989 |
tcgcccttttgattaaagctcagcgtcttaggctcaacataaattacatattccgggggagcttggatttgtgcggtatatgtgcttggagaccccacgt |
42715088 |
T |
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| Q |
216 |
tggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttga |
287 |
Q |
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| T |
42715089 |
ttgtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttga |
42715160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 42767739 - 42767786
Alignment:
| Q |
192 |
tatatgtgcttggagaccccacgttggtaagagtacgagtaacattta |
239 |
Q |
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| T |
42767739 |
tatatgtgcttggagacccaacgttggtgagagtacgagtaacattta |
42767786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 42741988 - 42742077
Alignment:
| Q |
198 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttga |
287 |
Q |
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| T |
42741988 |
tgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattga |
42742077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 42751347 - 42751436
Alignment:
| Q |
198 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttga |
287 |
Q |
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| T |
42751347 |
tgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattga |
42751436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 42736678 - 42736614
Alignment:
| Q |
223 |
agtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttga |
287 |
Q |
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| T |
42736678 |
agtacgagtaacattcaaagagtgtccaattttaaagtcaggaattgtgatggctggataattga |
42736614 |
T |
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