View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2681_low_19 (Length: 263)
Name: NF2681_low_19
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 28932371 - 28932127
Alignment:
| Q |
1 |
tgtgttattagtatcttaaaatatatacaagcaatatctcaacttgatgcaaaactaaatccaattcnnnnnnnttgttgtgtgtggacattaatcacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28932371 |
tgtgttattagtatcttaaaatatatacaagcaatatctcaacttgatgcaaaactaaatccaattcaaaaaaattgttgtgtgtggacattaatcacaa |
28932272 |
T |
|
| Q |
101 |
cctgaacttaatgtagtcaaccattttgttttgagatttatatacgatataccaacttatagtgtttacgtcacttatttttccttaa-aaaatgttaca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28932271 |
cctgaacttaatgtagtcaaccattttgttttgagatttatatacgatataccaacttatagtttttacgtcacttatttttccttaaaaaaatgttaca |
28932172 |
T |
|
| Q |
200 |
tttttattgattatgtatcttgagattcataatgagacgcgattc |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28932171 |
tttttattgattatgtatcttgagattcataatgagacgcgattc |
28932127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 35121885 - 35121992
Alignment:
| Q |
132 |
tgagatttatatacgatataccaacttatagtgtttac-gtcacttatttttccttaaaaaa--tgttacatttttattgattatgtatcttgagattca |
228 |
Q |
| |
|
||||||||||||| |||||| || |||||||| ||| |||| |||||||| |||||||| ||| | |||||||||||||||||||| ||||||| |
|
|
| T |
35121885 |
tgagatttatatatgatatatcagcttatagttttttttgtcagttatttttacttaaaaatgctgtgctacttttattgattatgtatcttaagattca |
35121984 |
T |
|
| Q |
229 |
taatgaga |
236 |
Q |
| |
|
|||||||| |
|
|
| T |
35121985 |
taatgaga |
35121992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University