View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2681_low_2 (Length: 589)

Name: NF2681_low_2
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2681_low_2
NF2681_low_2
[»] chr8 (4 HSPs)
chr8 (9-186)||(37810942-37811118)
chr8 (96-186)||(37810321-37810411)
chr8 (205-277)||(13579136-13579208)
chr8 (215-288)||(13579715-13579788)
[»] chr1 (6 HSPs)
chr1 (9-186)||(14228007-14228183)
chr1 (203-369)||(33082515-33082681)
chr1 (96-160)||(46314548-46314612)
chr1 (96-183)||(46315360-46315447)
chr1 (205-262)||(23729467-23729524)
chr1 (211-248)||(23729970-23730007)
[»] chr7 (2 HSPs)
chr7 (212-335)||(22817180-22817303)
chr7 (205-277)||(45648934-45649006)
[»] chr2 (6 HSPs)
chr2 (201-334)||(23857119-23857253)
chr2 (211-277)||(22482205-22482271)
chr2 (205-277)||(15285649-15285721)
chr2 (205-277)||(22482868-22482940)
chr2 (201-273)||(23857837-23857909)
chr2 (262-334)||(30339636-30339708)
[»] chr3 (5 HSPs)
chr3 (205-346)||(46753262-46753403)
chr3 (205-277)||(22243109-22243181)
chr3 (205-277)||(46753932-46754004)
chr3 (205-248)||(53067753-53067796)
chr3 (205-277)||(22242908-22242980)
[»] scaffold0017 (1 HSPs)
scaffold0017 (205-248)||(31214-31257)
[»] chr4 (1 HSPs)
chr4 (201-334)||(33931923-33932051)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 7e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 37810942 - 37811118
Alignment:
Q  9 gagatgaaaagcttaacctgaaaaattacacgtgaatgatagaagtgggggagagaaggatcccatgtcacatgatcatttaattagttttaatctcagc 108  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37810942 gagatgaaaagcttaacctggaaaattacacgtggatgatggaagtgggg-agagaaggatcccatgtcacatgatcatttaattagttttaatctcagc 37811040  T
Q  109 ccttcacttttaatttaatggatgcaattcatttatatcattctcacctataaataaaattctcatctgatatgcccc 186  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||    
T  37811041 ccttcacttttaatctaatggatgcaattcatttatatcattctcacctataaatatcattctcatgcgatatgcccc 37811118  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 37810411 - 37810321
Alignment:
Q  96 ttttaatctcagcccttcacttttaatttaatggatgcaattcatttatatcattctcacctataaataaaattctcatctgatatgcccc 186  Q
    ||||||||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||  |||||||| |||||||||||    
T  37810411 ttttaatctcagcccttcacttttaatctaatggctgtaattcattcatatcattctcacctataaatatcattctcatgtgatatgcccc 37810321  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 13579136 - 13579208
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaa 277  Q
    |||| |||||||||||||| || |||||||||||| |||||||| ||| | || | ||||| |||||||||||    
T  13579136 aatgctaatacacacccactttgattttagaaggtgtgcattagcatcctacatccatttggtttggacaaaa 13579208  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 13579788 - 13579715
Alignment:
Q  215 cacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaatttaccccttt 288  Q
    ||||||||| || |||||||||||| |||||||| ||  | |||| ||||| ||||||||||| | ||||||||    
T  13579788 cacacccactttgattttagaaggtgtgcattagcattctacacccatttggtttggacaaaaatgaccccttt 13579715  T

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Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 14228007 - 14228183
Alignment:
Q  9 gagatgaaaagcttaacctgaaaaattacacgtgaatgatagaagtgggggagagaaggatcccatgtcacatgatcatttaattagttttaatctcagc 108  Q
    |||||||||||||||||||| ||||||||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14228007 gagatgaaaagcttaacctggaaaattacacgtgcatgatgtaagtgggg-agagaaggatcccatgtcacatgatcatttaattagttttaatctcagc 14228105  T
Q  109 ccttcacttttaatttaatggatgcaattcatttatatcattctcacctataaataaaattctcatctgatatgcccc 186  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||||||||||||  ||| |||| |||||||||||    
T  14228106 ccttcacttttaatctaatggatgcaattcattcctatcattctcacctataaatatcattttcatatgatatgcccc 14228183  T

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Target: chr1; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 203 - 369
Target Start/End: Original strand, 33082515 - 33082681
Alignment:
Q  203 gtaatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaatttacccctttctctttcttcaatt 302  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33082515 gtaatgctaatacacatccaccttaattttagaaggtgtgcattagcatcatgcacctatttgtattggacaaaatttacccctttctctttcttcaatt 33082614  T
Q  303 atcattaaatgcatgtcccttaaagtaattttctaacccacacacatcaagttatttctctttctct 369  Q
    ||| |||||||||||||||||||||||||||| ||||||||||  ||||| || |||||||||||||    
T  33082615 atcgttaaatgcatgtcccttaaagtaattttttaacccacaccaatcaatttctttctctttctct 33082681  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 46314612 - 46314548
Alignment:
Q  96 ttttaatctcagcccttcacttttaatttaatggatgcaattcatttatatcattctcacctata 160  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||||||    
T  46314612 ttttaatctcagcccttcacttttaatctaatggctgcaattcattcctatcattctcacctata 46314548  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 46315360 - 46315447
Alignment:
Q  96 ttttaatctcagcccttcacttttaatttaatggatgcaattcatttatatcattctcacctataaataaaattctcatctgatatgc 183  Q
    |||||||||||||||||   ||||||| |||||||| ||||| |||  || ||||||||| ||||||||  |||||||| ||||||||    
T  46315360 ttttaatctcagccctttcattttaatctaatggatacaatttattcctaccattctcacatataaatatcattctcatgtgatatgc 46315447  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 23729467 - 23729524
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctat 262  Q
    |||| |||||||||||||||||  ||||||||||| |||||||| ||| | |||||||    
T  23729467 aatgctaatacacacccacctttgttttagaaggtgtgcattagcatcctacacctat 23729524  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 23730007 - 23729970
Alignment:
Q  211 aatacacacccaccttaattttagaaggtatgcattag 248  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  23730007 aatacacacccacctttattttagaaggtgtgcattag 23729970  T

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Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 212 - 335
Target Start/End: Complemental strand, 22817303 - 22817180
Alignment:
Q  212 atacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaatttacccctt-tctctttcttcaattatcattaa 310  Q
    |||| ||||||| ||||||||||||||| |||||| | ||||| |||||||||| |||||||||||  |||||||| ||||||| || |||| |||||||    
T  22817303 atacgcacccactttaattttagaaggtgtgcattggcatcatacacctatttgatttggacaaaaaataccccttctctcttt-tttaattgtcattaa 22817205  T
Q  311 atgcatgtcccttaaagtaattttc 335  Q
    |  ||||||| ||||||||||||||    
T  22817204 acacatgtcctttaaagtaattttc 22817180  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 45648934 - 45649006
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaa 277  Q
    |||| |||||||||||||| | ||||||||||||| || | ||| ||| | |||||| ||| |||||||||||    
T  45648934 aatgctaatacacacccacttcaattttagaaggtgtgtagtagcatcctacacctaattgatttggacaaaa 45649006  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 201 - 334
Target Start/End: Original strand, 23857119 - 23857253
Alignment:
Q  201 gggtaatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaatttacccctttctctttcttcaa 300  Q
    |||||||| |||| |||||| || | ||||||| ||||| |||||||| ||||| ||||| |||  |||||||  ||  ||||| |||||||||||||||    
T  23857119 gggtaatgctaatgcacacctacttgaattttaaaaggtgtgcattagcatcatacacctttttactttggacttaaagtaccc-tttctctttcttcaa 23857217  T
Q  301 ttatcattaaatgc--atgtcccttaaagtaatttt 334  Q
    || |||||||| ||  ||||| ||||||||||||||    
T  23857218 ttgtcattaaaagcatatgtctcttaaagtaatttt 23857253  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 22482205 - 22482271
Alignment:
Q  211 aatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaa 277  Q
    |||||||||||| |||||||||||||||| |||||||| ||| | |||||||||  ||| |||||||    
T  22482205 aatacacacccatcttaattttagaaggtgtgcattagcatcctacacctatttaatttagacaaaa 22482271  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 15285721 - 15285649
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaa 277  Q
    |||| |||||||||||||| | |||||||||| || |||||||| ||| | |||||| ||| |||||||||||    
T  15285721 aatgctaatacacacccacttcaattttagaatgtgtgcattagcatcctacacctaattgatttggacaaaa 15285649  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 22482940 - 22482868
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaa 277  Q
    |||| |||||||||||||| ||||||||||||||| |||||||| ||| | | |||||||  ||| |||||||    
T  22482940 aatgctaatacacacccacattaattttagaaggtgtgcattagcatcctactcctatttaatttagacaaaa 22482868  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 23857909 - 23857837
Alignment:
Q  201 gggtaatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggac 273  Q
    |||||||| |||| ||||||||| | ||||||||||||| |||||||| ||||| ||||| |||  |||||||    
T  23857909 gggtaatgctaatgcacacccacttgaattttagaaggtgtgcattagcatcatacacctttttactttggac 23857837  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 30339636 - 30339708
Alignment:
Q  262 tttgttttggacaaaatttacccctttctctttcttcaattatcattaaatgcatgtcccttaaagtaatttt 334  Q
    |||||||| |||||||  ||||| |||||||||||| |||| | |||||||||||  |  |||||||||||||    
T  30339636 tttgtttttgacaaaaaatacccttttctctttcttaaattgtgattaaatgcataactgttaaagtaatttt 30339708  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 346
Target Start/End: Original strand, 46753262 - 46753403
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaatttacccctttctct-ttcttcaatta 303  Q
    |||| |||||||||||||||||||||||| ||||| |||||||| ||| | |||||||||  ||| |||||||  || ||||| |||| || || ||||     
T  46753262 aatgctaatacacacccaccttaattttaaaaggtgtgcattagcatcctacacctatttaatttagacaaaaaata-cccttcctctcttttttaattg 46753360  T
Q  304 tcattaaatgcatgtcccttaaagtaattttctaacccacaca 346  Q
    || |||||||||| ||| ||| ||||||| || ||||| ||||    
T  46753361 tccttaaatgcatatcctttatagtaattgtccaacccccaca 46753403  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 22243181 - 22243109
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaa 277  Q
    |||| |||||||||||||| | ||||||||||||| |||||||| ||||| |||||| ||| |||||| ||||    
T  22243181 aatgctaatacacacccacttcaattttagaaggtgtgcattagcatcatacacctaattgatttggataaaa 22243109  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 46754004 - 46753932
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaa 277  Q
    |||| ||||||||||||||||||||||||||| || |||||||| ||| | | |||||||  ||| |||||||    
T  46754004 aatgctaatacacacccaccttaattttagaaagtgtgcattagcatcctactcctatttaatttagacaaaa 46753932  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 53067796 - 53067753
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattag 248  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||    
T  53067796 aatgctaatacacacccaccataattttagaaggtgtgcattag 53067753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 22242908 - 22242980
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaa 277  Q
    |||| ||||||| |||||| | ||||||||||| | |||||||| ||| | |||||| ||| |||||||||||    
T  22242908 aatgctaatacatacccacttcaattttagaagatgtgcattagcatcctacacctaattgatttggacaaaa 22242980  T

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Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 31257 - 31214
Alignment:
Q  205 aatgttaatacacacccaccttaattttagaaggtatgcattag 248  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||    
T  31257 aatgctaatacacacccaccataattttagaaggtgtgcattag 31214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 334
Target Start/End: Original strand, 33931923 - 33932051
Alignment:
Q  201 gggtaatgttaatacacacccaccttaattttagaaggtatgcattagaatcatgcacctatttgttttggacaaaatttacccctttctctttcttcaa 300  Q
    |||||||| |||||||||||||| | ||||||||||||| || ||||| ||  | |||||||||  |||| ||||||  ||||     || |||||||||    
T  33931923 gggtaatgctaatacacacccacatgaattttagaaggtgtgtattagcatgttacacctatttactttgaacaaaaagtacc-----ctttttcttcaa 33932017  T
Q  301 ttatcattaaatgcatgtcccttaaagtaatttt 334  Q
    || ||| |||| |||||   ||||||||||||||    
T  33932018 ttgtcactaaaagcatgcatcttaaagtaatttt 33932051  T

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