View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_low_22 (Length: 252)
Name: NF2681_low_22
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 44315304 - 44315086
Alignment:
| Q |
17 |
cataggtgttgaggtattttatagtaacggaaa--ttctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttgggataccgg |
114 |
Q |
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| T |
44315304 |
cataggtgttgaggtattttatagtaacggaaaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttgggatac-gg |
44315206 |
T |
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| Q |
115 |
cgatccaataatcttcccttcaatcaatggcgctcactcataaattgacctcttgactactcttgtgtcattttcctgtttggctcttaagcttcatatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44315205 |
cgatccaataatcttcccttcaatcaatggcgctcactcataaattgacctcttgactactcttgtgtcattttcctgtttggctcttaagcttcatatg |
44315106 |
T |
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| Q |
215 |
gtcataattaaggttttaga |
234 |
Q |
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|||||||||||||||||||| |
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| T |
44315105 |
gtcataattaaggttttaga |
44315086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 44308252 - 44308142
Alignment:
| Q |
17 |
cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttgggataccggcg |
116 |
Q |
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| T |
44308252 |
cataggtgttggggtgttttatagtaacggaaattctaatttaaggtaattaacatatttttagcaaatcacagcaatggtgatgcttggga-aacggcg |
44308154 |
T |
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| Q |
117 |
atccaataatct |
128 |
Q |
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|||||||||||| |
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| T |
44308153 |
atccaataatct |
44308142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 44194307 - 44194223
Alignment:
| Q |
17 |
cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatg |
101 |
Q |
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| T |
44194307 |
cataggtgttggagtgttttatagtaacgaaaattctaatttaggataattaacatatttttagcaaatcatagcgatggtgatg |
44194223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 44194161 - 44194103
Alignment:
| Q |
173 |
actcttgtgtcattttcctgtttggctcttaagcttcatatggtcataattaaggtttt |
231 |
Q |
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| T |
44194161 |
actcttgtgtcattttcctgtttggctcttaagcatcatatggtcctgataaaggtttt |
44194103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 44308104 - 44308049
Alignment:
| Q |
175 |
tcttgtgtcattttcctgtttggctcttaagcttcatatggtcataattaaggttt |
230 |
Q |
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| T |
44308104 |
tcttgtgtcattttcctgtttggctcttaagcatcatatggtcctgatcaaggttt |
44308049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 44300741 - 44300654
Alignment:
| Q |
17 |
cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga |
108 |
Q |
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| T |
44300741 |
cataggtgttggagtgttttatagtaacggaaattctaatttagggtaa----cgtactttcaagaaatcacagcgattgcgatgcttggga |
44300654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 23752201 - 23752292
Alignment:
| Q |
17 |
cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga |
108 |
Q |
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| T |
23752201 |
cataggtgttggggtgttttatagtaaaggaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttggga |
23752292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 23715286 - 23715377
Alignment:
| Q |
17 |
cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga |
108 |
Q |
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| T |
23715286 |
cataggtgttggggtgttttatagtaaatgaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttggga |
23715377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 23733742 - 23733833
Alignment:
| Q |
17 |
cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga |
108 |
Q |
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| T |
23733742 |
cataggtgttggggtgttttatagtaaatgaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttggga |
23733833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 23696834 - 23696922
Alignment:
| Q |
20 |
aggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga |
108 |
Q |
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|||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| |
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| T |
23696834 |
aggtgttggggtgttttatagtaaatgaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttggga |
23696922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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