View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_low_23 (Length: 250)
Name: NF2681_low_23
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_23 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 39299682 - 39299916
Alignment:
| Q |
16 |
atggttgtgatcataatggctgacaacattcaaactgtctaaccaatcatcagcagccttcaacaaagtgttcagttgagttgattcacgtgctttcgga |
115 |
Q |
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| T |
39299682 |
atggttgtgatcataatggctgacaacattcaaactgtctaaccaatcatcggcagccttcaacaaagtgttcagttgagttgattcacgtgctttcgga |
39299781 |
T |
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| Q |
116 |
aaagccaaaattgaccttttcagcttatcagtagttaggccaaaaattggaagaggcattttcagcggtccatctccatcatgcaactttggttgatttt |
215 |
Q |
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| T |
39299782 |
aaagccaaaattgaccttttcagcttatcagtagttaggccaaaaattggaagaggcattttcagcggtccatctccatcatgcaactttggttgatttt |
39299881 |
T |
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| Q |
216 |
tgcctgtgacgaaggaagagatataaaattagata |
250 |
Q |
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| T |
39299882 |
tgcctgtgacgaaggaagagatataaaattagata |
39299916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 247
Target Start/End: Original strand, 39307541 - 39307743
Alignment:
| Q |
39 |
caacattcaaactgtctaaccaatcatcagcagccttcaacaaagtgttcagttgagttgattcacgtgctttcggaaaagccaaaattgaccttttcag |
138 |
Q |
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| T |
39307541 |
caaccttcaaactctttaaccaaacatcggcagccttcaacaaagagttcatttcatctgattttgctgctttcggaagagtcaaaattgacccttccag |
39307640 |
T |
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| Q |
139 |
cttatcagtagttaggccaaaaattggaagaggcattttcagcggtccatctccatcatgcaactttggttgatttttgcctgtgacgaaggaagagata |
238 |
Q |
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| T |
39307641 |
gttataagtagttatgccaaaaataggaataggcatcttcaaggattcatct------tgcaactttaattgatttttagctgtgagaaaggaagagata |
39307734 |
T |
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| Q |
239 |
taaaattag |
247 |
Q |
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| T |
39307735 |
taaaattag |
39307743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 26563405 - 26563536
Alignment:
| Q |
39 |
caacattcaaactgtctaaccaatcatcagcagccttcaacaaagtgttcagttgagttgattcacgtgctttcggaaaagccaaaattgaccttttcag |
138 |
Q |
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| T |
26563405 |
caaccttcaaactctttaaccaaacatcggcagccttcaactaagagttcatttcatgtgaatcagatgtttccggaagagtcaaaattgaccctttcag |
26563504 |
T |
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| Q |
139 |
cttatcagtagttaggccaaaaattggaagag |
170 |
Q |
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| T |
26563505 |
gttataagtagttaagccaaaaataggaagag |
26563536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 26563557 - 26563604
Alignment:
| Q |
197 |
tgcaactttggttgatttttgcctgtgacgaaggaagagatataaaat |
244 |
Q |
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| T |
26563557 |
tgcaaatttggttgatttttgcctgtgagaaaggtagagatataaaat |
26563604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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