View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_low_3 (Length: 554)
Name: NF2681_low_3
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 28932501 - 28933049
Alignment:
| Q |
1 |
aaattgacacattgtttggaatttgattagtagttatcctttttgcaggtttctcacaatgttagagagaaaatttcagctgcaactgaggaggtctgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932501 |
aaattgacacattgtttggaatttgattagtagttatcctttttgcaggtttctcacaatgttagagagaaaatttcagctgcaactgaggaggtctgat |
28932600 |
T |
|
| Q |
101 |
ttacaaattttccataaacatgtgatctacaattgttggcttaatgatattactctta----ggtgaaagttgggataggaaagcaggactcttcaggat |
196 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28932601 |
ttacaaattttccataaaaatgtgatccacaattgttggcttactgatattactcttaattaggtgaaagttgggataggaaagcaggactcttcaggat |
28932700 |
T |
|
| Q |
197 |
caactgattcttcaacaaaactggatgctgatgcaaagcaaggaagtcagacatcacccgaggaagagaaaaaccaggaatttgcatctggtaatacttc |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932701 |
caactgattcttcaacaaaactggatgctgatgcaaagcaaggaagtcagacatcacccgaggaagagaaaaaccaggaatttgcatctggtaatacttc |
28932800 |
T |
|
| Q |
297 |
agagtcaatgtttggcaaatttaagtcaaccttttcatcaccaaatgtttctacttccttccaaaaattaaaggatgcaaaaattgtggacataaccaag |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28932801 |
agagtcaatgtttggcaaatttaagtcaaccttttcatcaccaaatgtttctacttccttccaaaaattaaaggatgcaaaaattgtagacataaccaag |
28932900 |
T |
|
| Q |
397 |
aaaggttatggcatactaagggaggaactaagtagtgatccacctaagagacggcgtgttcattccactcctagcggcgaaataagtacaaaaaccgatc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28932901 |
aaaggttatggcatactaagggaggaactaagtagtgatccacctaagagacggcgtgttcgttccactcctagcggcgaaataagtacaaaaaccgatc |
28933000 |
T |
|
| Q |
497 |
ttgttgttattccctctaaaccaatctttttggagtcagatgtgtgatga |
546 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
28933001 |
ttgttgttattccctct-aacctatctttttggagtcagatgtgtgatga |
28933049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 197 - 524
Target Start/End: Original strand, 10186967 - 10187286
Alignment:
| Q |
197 |
caactgattcttcaacaaaactggatgctgatgcaaagcaaggaagtcagacatcacccgaggaagagaaaaaccaggaatttgcatctggtaatacttc |
296 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| | | ||||| ||| |||| |
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| T |
10186967 |
caactgatttttcaacaaaacagaatgctgatgcaaagcaaggaagtcagaaatcacctgaggaagagaaaaacgaggaatctccgtctggcaatgcttc |
10187066 |
T |
|
| Q |
297 |
agagtcaatgtttggcaaatttaagtcaaccttttcatcaccaaatgtttctacttccttccaaaaattaaaggatgcaaaaattgtggacataaccaag |
396 |
Q |
| |
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||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
10187067 |
agaatcattgtttggcaaatttaagtcaaccttttcgtcaccaatggtttctacttccttccaaaaattaaaggatgc-aaaattgtggacatgaccaag |
10187165 |
T |
|
| Q |
397 |
aaaggttatggcatactaagggaggaactaagtagtgatccacctaagagacggcgtgttcattccactcctagcggcgaaataagtacaaaaaccgatc |
496 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||| | |||||||||||| |||| ||| || ||| ||||||||||||||||||||| |||| |
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| T |
10187166 |
aaaggttatgacatactaaaggaggagctaagtagtaactcacctaagagacagcgtattcgtttcac------cggcgaaataagtacaaaaactgatc |
10187259 |
T |
|
| Q |
497 |
ttgttgttattccctctaaaccaatctt |
524 |
Q |
| |
|
|||||||||| |||||| |||||||||| |
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|
| T |
10187260 |
ttgttgttatgccctct-aaccaatctt |
10187286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 10186900 - 10186973
Alignment:
| Q |
16 |
ttggaatttgattagtagttatcctttttgcaggtttctcacaatgttagagagaaaatttcagctgcaactga |
89 |
Q |
| |
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|||||||||||| |||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10186900 |
ttggaatttgatcagtaattataccttttgcaggtttctcacaatgttaaagagaaaatttcagctgcaactga |
10186973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 546
Target Start/End: Complemental strand, 35121545 - 35121010
Alignment:
| Q |
16 |
ttggaatttgattagtagttatcctttttgcaggtttctcacaatgttagagagaaaatttcagctgcaactgaggaggtctgatttacaaattttccat |
115 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
35121545 |
ttggaatttgattagtaattatatcttttgcaggtttctcacaatgttaaagagaaaatttcagctgcaactgaggaggtgtgatttacaaatcttccaa |
35121446 |
T |
|
| Q |
116 |
aaacatgtgatctacaattgttggcttaatgatattactc--------ttaggtgaaagttgggataggaaagcaggactcttcaggatcaactgattct |
207 |
Q |
| |
|
|| || |||| |||||| |||| || ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
35121445 |
caa--tgagatccacaatttatggcctactgatattcctcattttaaattaggtgaaagctgggataggaaagcaggactcttcaggatcaacagattct |
35121348 |
T |
|
| Q |
208 |
tcaacaaaactggatgctgatgcaaagcaaggaagtcagacatcacccgaggaagagaaaaaccaggaatttgcatctggtaatacttcagagtcaatgt |
307 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||| ||| |
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|
| T |
35121347 |
tcaacaaaacaggatgcggatgcaaagcaaggaagacagacatcacccgaggaagagaaaaaccaggaatctgcttctggcaatgcttcagagtcattgt |
35121248 |
T |
|
| Q |
308 |
ttggcaaatttaagtcaaccttttcatcaccaaatgtttctacttccttccaaaaattaaaggatgcaaaaattgtggacataaccaagaaaggttatgg |
407 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35121247 |
ttggaaaatttaagtcaaccttttcgtcaccaaaagtttctacttccttccaaaaattaaaggatgcaaaaattgtggacatgaccaagaaaggttatga |
35121148 |
T |
|
| Q |
408 |
catactaagggaggaactaagtagtgatccacctaagagacggcgtgttcattccactcctagcggcgaaataagtacaaaaaccgatcttgttgttatt |
507 |
Q |
| |
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|||||||| ||||||||||||| | | |||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
35121147 |
catactaaaggaggaactaagtggcaacacacctaagagacagcctgttcattccactcctagcggcgaaacaagtacaaaaactgatcttgttgttatg |
35121048 |
T |
|
| Q |
508 |
ccctctaaaccaatctttttggagtcagatgtgtgatga |
546 |
Q |
| |
|
|||||| |||||||||| |||||| ||| || |||||| |
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|
| T |
35121047 |
ccctct-aaccaatcttggtggagtaagaagtttgatga |
35121010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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