View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_low_4 (Length: 465)
Name: NF2681_low_4
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 2700948 - 2700512
Alignment:
| Q |
11 |
cagagacaaagaaggtgaagttttagtctcagatggctacaacttcgtgatgggtttctttgggtttgaaaattcttcttcacgttacgttggtatttgg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700948 |
cagagacaaagaaggtgaagttttagtctcagatggctacaacttcgtgatgggtttctttgggtttgaaaattcttcttcacgttacgttggtatttgg |
2700849 |
T |
|
| Q |
111 |
tactacaacattcctggacccgaagttatttgggttgcaaacagaaacaaacccatcaatggaaacggtggttccttcactgtatcaacaaacggaaact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700848 |
tactacaacattcctggacccgaagttatttgggttgcaaacagaaacaaacccatcaatggaaacggtggttccttcactgtatcaacaaacggaaact |
2700749 |
T |
|
| Q |
211 |
tagttatccttgatggaaacaaaaaccaactttggtcaaccaatgtttctatcattcaaaccaataagaataactcggaagctgttcttcgagatgatgg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700748 |
tagttatccttgatggaaacaaaaaccaactttggtcaaccaatgtttctatcatccaaaccaataagaataactcggaagctgttcttcgagatgatgg |
2700649 |
T |
|
| Q |
311 |
taatcttgttctttcaaatgagaaagtggtgttatgggaaagctttgagaatccaagcgatacttatgtacctggtatgaaagttcctgttaatgggaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700648 |
taatcttgttctttcaaatgagaaagtggtgttatgggaaagctttgagaatccaagcgatacttatgtacctggtatgaaagttcctgttaatgggaag |
2700549 |
T |
|
| Q |
411 |
agttttttcttcacttcatggaaatcaagtacagatc |
447 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2700548 |
agttttttcttcacttcatggaaatcaagtacagatc |
2700512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 2693246 - 2692810
Alignment:
| Q |
11 |
cagagacaaagaaggtgaagttttagtctcagatggctacaacttcgtgatgggtttctttgggtttgaaaattcttcttcacgttacgttggtatttgg |
110 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||| |||||||||| |||||||||||||| ||| || | |||||||| ||||| ||||| |||||| |
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| T |
2693246 |
cagagacgaagatggtgaagttttattctcagatgggcacaacttcgtaatgggtttctttggttttcaagactcttcttctcgttatgttggaatttgg |
2693147 |
T |
|
| Q |
111 |
tactacaacattcctggacccgaagttatttgggttgcaaacagaaacaaacccatcaatggaaacggtggttccttcactgtatcaacaaacggaaact |
210 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| || |||||||| || ||| || || |||||| || | |
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| T |
2693146 |
tactacaacattcctggtccagaagttatttgggttgcaaacagaaacacacccatcaatggcaatggtggttcttttactataacagaaaacggtaatt |
2693047 |
T |
|
| Q |
211 |
tagttatccttgatggaaacaaaaaccaactttggtcaaccaatgtttctatcattcaaaccaataagaataactcggaagctgttcttcgagatgatgg |
310 |
Q |
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||||||||||||||| ||||||||||||||| ||||| ||||||||||| | | ||| || ||||| ||||||| | |||||| || || |||||||||| |
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| T |
2693046 |
tagttatccttgatgaaaacaaaaaccaactatggtctaccaatgtttccagcgttcgaaacaatatgaataacactgaagcttttgttagagatgatgg |
2692947 |
T |
|
| Q |
311 |
taatcttgttctttcaaatgagaaagtggtgttatgggaaagctttgagaatccaagcgatacttatgtacctggtatgaaagttcctgttaatgggaag |
410 |
Q |
| |
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||||||||||||||||||||| || ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2692946 |
taatcttgttctttcaaatgataatgtggtgttatgggaaagctttaagcatccaagtgatacttatgtacctggtatgaaagttcctgtgaatgggaag |
2692847 |
T |
|
| Q |
411 |
agttttttcttcacttcatggaaatcaagtacagatc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
2692846 |
agttttttcttcacttcatggaaatcaagtacagatc |
2692810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 14522315 - 14521887
Alignment:
| Q |
19 |
aagaaggtgaagttttagtctcagatggctacaacttcgtgatgggtttctttgggtttgaaaattcttcttcacgttacgttggtatttggtactacaa |
118 |
Q |
| |
|
|||||||||| |||||| |||||||||| | |||||| | |||||||||||||| || | || |||||||| ||||| || |||||||||||||| || |
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|
| T |
14522315 |
aagaaggtgatgttttattctcagatggtttcaactttgctatgggtttctttggtttcggcaactcttcttctcgttatgtcggtatttggtactataa |
14522216 |
T |
|
| Q |
119 |
cattcctggacccgaagttatttgggttgcaaacagaaacaaacccatcaatggaaacggtggttccttcactgtatcaacaaacggaaacttagttatc |
218 |
Q |
| |
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||| |||||||| | |||||||||||||||| ||||||| |||||| ||||| ||| ||||||| ||||||||| | ||| || || || |||||| |
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| T |
14522215 |
catacctggaccgcagattatttgggttgcaaatagaaacacacccataaatggcaaccgtggttctttcactgtagcggaaaatggtaatttggttatc |
14522116 |
T |
|
| Q |
219 |
cttgatggaaacaaaaaccaactttggtcaaccaatgtttctatcattcaaaccaataagaataactcggaagctgttcttcgagatgatggtaatcttg |
318 |
Q |
| |
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||||||| ||||||||||||| | ||||| || ||||||||||||| ||||| ||||| | |||||| |||||||||||| |||||||||||||||||| |
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|
| T |
14522115 |
cttgatgaaaacaaaaaccaaatatggtcgacaaatgtttctatcagtcaaaacaatacggataactatgaagctgttcttagagatgatggtaatcttg |
14522016 |
T |
|
| Q |
319 |
ttctttcaaatgagaaagtggtgttatgggaaagctttgagaatccaagcgatacttatgtacctggtatgaaagttcctgttaatgggaagagtttttt |
418 |
Q |
| |
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||||| | |||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14522015 |
ttcttgcgaatgagaatgcggtgttatgggaaagctttgagaatccatgtgatacttatgtacctggtatgaaagttcctgtgaatgggaagagtttttt |
14521916 |
T |
|
| Q |
419 |
cttcacttcatggaaatcaagtacagatc |
447 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
14521915 |
cttcacatcatggaaatcaagtacagatc |
14521887 |
T |
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