View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2681_low_5 (Length: 451)
Name: NF2681_low_5
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2681_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 433
Target Start/End: Complemental strand, 3149445 - 3149032
Alignment:
| Q |
21 |
aatagaagtccgagtcatttagacaatttctcctaggttagtgcaatttctccttaagatcaatcaaacaagaagacagacaaatcattagtaaatgtaa |
120 |
Q |
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||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3149445 |
aatagaagttcgattcttttagacaatttctcctaggttagtgcaatttctccttaagatcaatcaaacaagaagacagacaaatcattagtacatgtaa |
3149346 |
T |
|
| Q |
121 |
gagtatggttctatgcacatctagtagaactgaaagctttaaatttcttggtcttgatttaaatccaagctaagtcagaagccatgcactgatttaataa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3149345 |
gagtatggttctatgcacatctagtagaactgaaagctttaaatttcttggtcttgatttaaatccaagctaagtcagaagccatgcactgatttaataa |
3149246 |
T |
|
| Q |
221 |
gttaaaacgataatatacaaacggcagcagcatttaataaaatcttaagaaccctacccatttccagatcagtaagcatgaaagatcttaccctactaga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3149245 |
gttaaaacgataatatacaaacggcagcagcatttaataaaatcttaagaaccctacccatttccagatcagtaagcatgaaagatcttaccctactaga |
3149146 |
T |
|
| Q |
321 |
cagaaagaaacaagatacagaaaacacagcaaaaatgttatactccatgtc-nnnnnnnccaatgctactgagatcttaattcaaattacattacttgca |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
3149145 |
cagaaagaaacaagatacagaaaacacagcaaaaatgttatactccatgtcttttttttccaatgctgctgagatcttaattcaaattacattacttgca |
3149046 |
T |
|
| Q |
420 |
tgcactgcagacac |
433 |
Q |
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|||||||||||||| |
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| T |
3149045 |
tgcactgcagacac |
3149032 |
T |
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