View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2681_low_6 (Length: 433)

Name: NF2681_low_6
Description: NF2681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2681_low_6
NF2681_low_6
[»] chr8 (1 HSPs)
chr8 (6-129)||(29489426-29489553)
[»] chr6 (9 HSPs)
chr6 (202-414)||(6465152-6465371)
chr6 (226-414)||(6526188-6526386)
chr6 (191-345)||(6473172-6473326)
chr6 (195-345)||(1831922-1832072)
chr6 (202-345)||(6457268-6457411)
chr6 (191-295)||(13035871-13035975)
chr6 (274-345)||(1827219-1827290)
chr6 (205-284)||(1822289-1822368)
chr6 (205-301)||(1839029-1839125)
[»] chr7 (3 HSPs)
chr7 (243-345)||(46383312-46383414)
chr7 (206-318)||(4046154-4046266)
chr7 (231-326)||(3753997-3754092)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 29489426 - 29489553
Alignment:
Q  6 atatattataatatagtagattaatat----taccattctaatatagctatgtggatgacaatacaaacaaggaagagggtattggtgagtgtgatcatg 101  Q
    |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29489426 atatattataatatagtagattaatatatattaccattctaatatagctatgtggatgacaatacaaacaaggaagagggtattggtgagtgtgatcatg 29489525  T
Q  102 cattgtgcttaattctattgctaatgga 129  Q
    ||||||||||||||||||||||||||||    
T  29489526 cattgtgcttaattctattgctaatgga 29489553  T

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Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 202 - 414
Target Start/End: Complemental strand, 6465371 - 6465152
Alignment:
Q  202 accaaacaagggtctaatgatactggtgctgattttggattcggagtttataatgatcgtcattatcatctcggatactttctatatggaattggagtgc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||||||  ||||    
T  6465371 accaaacaagggtctaatgatactggtgctgattttggattcggagtttataatgatcatcattatcatttaggatactttctctatggaattgctgtgc 6465272  T
Q  302 ttgctaagactgatcctatttggggtagaaagcataagcctcaa-------ccctcctggctgattttatgaatttgagtataaattcaaaccctagtta 394  Q
    |||| |||| |||||| ||||||||||| ||| |||||||||||       | ||| |||||||||||||||| ||||| | |||| | ||| | | |||    
T  6465271 ttgcaaagattgatccaatttggggtaggaagtataagcctcaagcttattcactcatggctgattttatgaacttgagcagaaatccgaactcgaatta 6465172  T
Q  395 cacccgtctaaggtgtttcg 414  Q
    ||||||||||||||||||||    
T  6465171 cacccgtctaaggtgtttcg 6465152  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 226 - 414
Target Start/End: Complemental strand, 6526386 - 6526188
Alignment:
Q  226 ggtgctgattttggattcggagtttataatgatcgtcattatcatctcggatactttctatatggaattggagtgcttgctaagactgatcctatttggg 325  Q
    |||||||||||||| ||||||||||||||||||| |||||||||| | ||||||||||| |||||||||| |||||||||||||| ||||||||||||||    
T  6526386 ggtgctgattttgggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggg 6526287  T
Q  326 gtagaaagcataagcctcaaccc-------tcctggctgattttatgaatttgagtataaattcaaaccctag---ttacacccgtctaaggtgtttcg 414  Q
    |||||||| ||||| ||||| ||       || ||||||||||||||||| |||| | |||||||||||||||   |||||| | ||||||||||||||    
T  6526286 gtagaaagtataagtctcaagcctattctgtcatggctgattttatgaatctgagcagaaattcaaaccctagttattacacgcatctaaggtgtttcg 6526188  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 191 - 345
Target Start/End: Original strand, 6473172 - 6473326
Alignment:
Q  191 gaggtattataaccaaacaagggtctaatgatactggtgctgattttggattcggagtttataatgatcgtcattatcatctcggatactttctatatgg 290  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||| || |||||| |||||||||||| |||||||||| | || |||||||| |||||    
T  6473172 gaggtattataaccaaacaaggttctactgataccggtgctgatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatgg 6473271  T
Q  291 aattggagtgcttgctaagactgatcctatttggggtagaaagcataagcctcaa 345  Q
    ||||| |||||||||||||| ||||||  |||||||||  ||  |||||||||||    
T  6473272 aattgcagtgcttgctaagattgatccagtttggggtaagaaatataagcctcaa 6473326  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 345
Target Start/End: Original strand, 1831922 - 1832072
Alignment:
Q  195 tattataaccaaacaagggtctaatgatactggtgctgattttggattcggagtttataatgatcgtcattatcatctcggatactttctatatggaatt 294  Q
    ||||||| ||||||||||||||||| ||||||||| |||||| || || ||| || |||| || | |||||||||| | ||||||||||| | |||||||    
T  1831922 tattatagccaaacaagggtctaataatactggtgttgatttcgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaatt 1832021  T
Q  295 ggagtgcttgctaagactgatcctatttggggtagaaagcataagcctcaa 345  Q
    | ||||||||| |||| |||||| |||||||||||| || |||||||||||    
T  1832022 gcagtgcttgcaaagattgatccaatttggggtagagagtataagcctcaa 1832072  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 345
Target Start/End: Complemental strand, 6457411 - 6457268
Alignment:
Q  202 accaaacaagggtctaatgatactggtgctgattttggattcggagtttataatgatcgtcattatcatctcggatactttctatatggaattggagtgc 301  Q
    ||||||||||| ||| | ||| | || || |||||||| |||||  |||||||||||| |||||||||| | ||||||||||| |||||||||| |||||    
T  6457411 accaaacaaggctctcaagattcaggggcagattttgggttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgc 6457312  T
Q  302 ttgctaagactgatcctatttggggtagaaagcataagcctcaa 345  Q
    |||| |||| ||||||   |||||| |||||| |||| ||||||    
T  6457311 ttgcaaagattgatccagcttggggaagaaagtataaacctcaa 6457268  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 13035871 - 13035975
Alignment:
Q  191 gaggtattataaccaaacaagggtctaatgatactggtgctgattttggattcggagtttataatgatcgtcattatcatctcggatactttctatatgg 290  Q
    ||||||||||||| |||||||| |||| |||||| ||||||||||| || || ||| |||||||||| | |||||||||| | || |||||||| |||||    
T  13035871 gaggtattataacgaaacaaggttctactgataccggtgctgatttcgggtttggaatttataatgaccatcattatcatttaggttactttctctatgg 13035970  T
Q  291 aattg 295  Q
    |||||    
T  13035971 aattg 13035975  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 1827219 - 1827290
Alignment:
Q  274 ggatactttctatatggaattggagtgcttgctaagactgatcctatttggggtagaaagcataagcctcaa 345  Q
    ||||||||||| ||| |||||| ||||||||| |||| |||| | ||||||||||||||  |||||||||||    
T  1827219 ggatactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaa 1827290  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 1822289 - 1822368
Alignment:
Q  205 aaacaagggtctaatgatactggtgctgattttggattcggagtttataatgatcgtcattatcatctcggatactttct 284  Q
    |||||||||||||||   ||||||||||||||||| ||  || |||||||||| | |||||||||| | | |||||||||    
T  1822289 aaacaagggtctaatatgactggtgctgattttgggttttgaatttataatgaccatcattatcatttagaatactttct 1822368  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 1839029 - 1839125
Alignment:
Q  205 aaacaagggtctaatgatactggtgctgattttggattcggagtttataatgatcgtcattatcatctcggatactttctatatggaattggagtgc 301  Q
    |||||||||||||||   |||||||||||||| || || ||| ||||| |||| | |||||||||| | ||||| ||||| ||  |||||| |||||    
T  1839029 aaacaagggtctaatatgactggtgctgatttcgggtttggaatttatgatgagcatcattatcatttaggatagtttctctaatgaattgcagtgc 1839125  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 46383414 - 46383312
Alignment:
Q  243 cggagtttataatgatcgtcattatcatctcggatactttctatatggaattggagtgcttgctaagactgatcctatttggggtagaaagcataagcct 342  Q
    ||||||| | ||||||| |||||||||| | ||||| | ||| |||||||||  |||||| || |||| |||||||||||||||||| ||| ||||| ||    
T  46383414 cggagttaaaaatgatcatcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataagtct 46383315  T
Q  343 caa 345  Q
    |||    
T  46383314 caa 46383312  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 4046266 - 4046154
Alignment:
Q  206 aacaagggtctaatgatactggtgctgattttggattcggagtttataatgatcgtcattatcatctcggatactttctatatggaattggagtgcttgc 305  Q
    ||||||||  ||||||| |  ||||||||||||| || ||| | |||||||||| |||||||||| | || || ||||| |||||||||||||| |||||    
T  4046266 aacaagggattaatgattcaagtgctgattttggttttggaatgtataatgatcatcattatcatttaggttattttctttatggaattggagttcttgc 4046167  T
Q  306 taagactgatcct 318  Q
     || | |||||||    
T  4046166 aaaaattgatcct 4046154  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 3753997 - 3754092
Alignment:
Q  231 tgattttggattcggagtttataatgatcgtcattatcatctcggatactttctatatggaattggagtgcttgctaagactgatcctatttgggg 326  Q
    ||||||||| || ||| |||||||||||| |||||||||| | || || ||||| ||||||||||  || ||||| |||| ||||||  |||||||    
T  3753997 tgattttggttttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatccattttgggg 3754092  T

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