View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2682_high_11 (Length: 239)
Name: NF2682_high_11
Description: NF2682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2682_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 32773631 - 32773815
Alignment:
| Q |
18 |
ccttttagctattttgaaacatttcaataaattagggttttaacatttgtaattatgttttagttgatttataactaattgagaatcaccttatattagc |
117 |
Q |
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| T |
32773631 |
ccttttagttattttgaaacatttcaataaattagggttttaacatttgtaattatgttttagttgatttataactaattgagaatcaccttatattagc |
32773730 |
T |
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| Q |
118 |
acatttcttgctttaaaagttagtctgagcgaatcaccttataactagtggaacacaagttaacgaaagttcaattaaagttagt |
202 |
Q |
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| T |
32773731 |
acatttcttgctttaaaagttagtcttagcgaatcaccttataactagtggaacacaagttaacgaaagttcaattaaagttagt |
32773815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 32773819 - 32773852
Alignment:
| Q |
189 |
caattaaagttagtcttagcgaatttcagtcctt |
222 |
Q |
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| T |
32773819 |
caattaaagttagtcttagcgaatttcagtcctt |
32773852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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