View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2682_high_2 (Length: 311)
Name: NF2682_high_2
Description: NF2682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2682_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 24224802 - 24224507
Alignment:
| Q |
1 |
caacattccttaaacttttgggatctcaacagcggaagcaataaacaattcaatgaggattaaatcatgctttggataccatgttaacaatatagataat |
100 |
Q |
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| T |
24224802 |
caacattccttaaacttttgggaactcaatagcgaaagcgataaacaattcaatgaggattagatcatgctttgaataccatgttaacaatatagataat |
24224703 |
T |
|
| Q |
101 |
aagataaaataacaaagtgactaacaaatacagttagagtttcatagaataccaataacttaacactgagttatctattagctaagctactaactcaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |
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| T |
24224702 |
aagataaaataacaaagtgactaacaaatacagttagcgtttcatagaataccaataactcaacactcagttatctattagctaagctactgactcaagt |
24224603 |
T |
|
| Q |
201 |
tttctatannnnnnnnnnnnncttatgtatcttaatgcgctcggatttcttcatgtgcgctctttgtattggggagaatcttttgtggtaatatat |
296 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224602 |
tttctatatttttttgtttttcttatgtatcttaatgcactcggatttcttcatgtgcgctctttgtattggggagaatcttttgtggtaatatat |
24224507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 11096986 - 11096893
Alignment:
| Q |
70 |
ctttggataccatgttaacaatatagataataagataaaataacaaagtgactaacaaatacagttagagtttcatagaataccaataacttaa |
163 |
Q |
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| T |
11096986 |
ctttagatatcatgttaacaatatagctaatcggagagaataacaaagagactaaaaaagacagttagagtttcatagaatacctataccttaa |
11096893 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 42631524 - 42631591
Alignment:
| Q |
89 |
aatatagataataagataaaataacaaagtgactaacaaatacagttagagtttcatagaataccaat |
156 |
Q |
| |
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| T |
42631524 |
aatatagataatcagatagaataacaaagagactaacaaaaactgttagagtttcatagaatatcaat |
42631591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 814352 - 814396
Alignment:
| Q |
121 |
ctaacaaatacagttagagtttcatagaataccaataacttaaca |
165 |
Q |
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| T |
814352 |
ctaacaaagacagctagagtttcatagaataccaatagcttaaca |
814396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 3950652 - 3950609
Alignment:
| Q |
57 |
ggattaaatcatgctttggataccatgttaacaatatagataat |
100 |
Q |
| |
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| T |
3950652 |
ggatcaaaccatgctttcgataccatgttaacaatatagataat |
3950609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 10740824 - 10740746
Alignment:
| Q |
12 |
aaacttttgggatctcaacagcggaagcaataaacaattcaatgaggattaaatcatgctttggataccatgttaacaa |
90 |
Q |
| |
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|||||||||||| |||||| |||||||| | | | |||||| |||||| ||| |||||| | |||||||||||||||| |
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| T |
10740824 |
aaacttttgggaactcaactgcggaagcgacagatcattcaaggaggatcaaaccatgctcttgataccatgttaacaa |
10740746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 17749880 - 17749814
Alignment:
| Q |
82 |
tgttaacaatatagataataagataaaataacaaagtgactaacaaatacagttagagtttcataga |
148 |
Q |
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||||||||||||||||||| ||| | ||||| |||| |||||||||| || |||| |||||||||| |
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| T |
17749880 |
tgttaacaatatagataatcagagagaataataaagagactaacaaaaacggttaaggtttcataga |
17749814 |
T |
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