View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2682_high_8 (Length: 250)
Name: NF2682_high_8
Description: NF2682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2682_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 13037652 - 13037562
Alignment:
| Q |
156 |
ctgtgtggatcaataatg-acagtaaccnnnnnnnttcctattttaagaaaatcgtactctataaatttcaatgtgtttcttcatttcagt |
245 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13037652 |
ctgtgtggatcaataatggacagtaaccaaaaaaattcctattttaagaaaatcctactctataaatttcaatgtgtttcttcatttcagt |
13037562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 13107660 - 13107570
Alignment:
| Q |
156 |
ctgtgtggatcaataatg-acagtaaccnnnnnnnttcctattttaagaaaatcgtactctataaatttcaatgtgtttcttcatttcagt |
245 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13107660 |
ctgtgtggatcaataatggacagtaaccaaaaaaattcctattttaagaaaatcctactctataaatttcaatgtgtttcttcatttcagt |
13107570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University