View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2682_low_1 (Length: 520)
Name: NF2682_low_1
Description: NF2682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2682_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 15 - 502
Target Start/End: Original strand, 6170948 - 6171437
Alignment:
| Q |
15 |
aatatacaacaaaatggaaaatagaaaaacgaagagatataaactccaacgtgcaaaggttaaagagggagaccgcaacttaaaaacaccaatagcaaaa |
114 |
Q |
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| T |
6170948 |
aatatacaacaaaatggaaaatagaaaaacgaagagatataaactccaacgtgcaaaggttaaagagggagaccgcaacttaaaaacaccaatagcaaaa |
6171047 |
T |
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| Q |
115 |
actcgtgagtaccagagcaagacataaccagtagggcaacgaaaaccaaacacccgacaaacaaacacaacctaaatcggccgttgctcaagctcaaccg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6171048 |
actcgtgagtaccagagcaagacataaccagtagggcaacgaaaaccaaacacccgacaaacaaacacaacctaaatcggtcgttgctcaagctcaaccg |
6171147 |
T |
|
| Q |
215 |
tcaccaatttcgcaaaaaagatcaattcattcagggacatttaaatggactacacgaccaaataagttgatatattatttgcatgattgaatccatgaca |
314 |
Q |
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| T |
6171148 |
tcaccaatttcgcaaaaaagatcaattcattcagggacatttaaatggactacacgaccaaataagttgatatattatttgcatgattgaatctatgaca |
6171247 |
T |
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| Q |
315 |
tgttaattaaaatacagtttaatagccatataatgttcatgtaaatcaattttacagta--nnnnnnnnggataaaggcaaatgaacaattacaaatatt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6171248 |
tgttaattaaaatacagtttaatagccatataatgttcatgtaaatcaattttacagtattttttttttggataaaggcaaatgaacaattacaaatatt |
6171347 |
T |
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| Q |
413 |
tgatcaaatatgtgacttataaaagtgagatgatatgacgaaataatgaattttaattagttttccatattccttaaatctcacaataat |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6171348 |
tgatcaaatatgtgacttataaaagtgagatgatatgacgaaataatgaattttaattagttttccatattccttaaatctcacaataat |
6171437 |
T |
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