View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2682_low_11 (Length: 243)

Name: NF2682_low_11
Description: NF2682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2682_low_11
NF2682_low_11
[»] chr3 (9 HSPs)
chr3 (1-238)||(40709238-40709474)
chr3 (69-243)||(4957632-4957807)
chr3 (18-121)||(50385266-50385372)
chr3 (148-223)||(6130650-6130725)
chr3 (178-229)||(50385182-50385233)
chr3 (69-110)||(43106641-43106682)
chr3 (174-243)||(43107858-43107927)
chr3 (25-69)||(4957770-4957814)
chr3 (150-229)||(16930357-16930436)
[»] chr5 (6 HSPs)
chr5 (1-243)||(28283482-28283723)
chr5 (148-218)||(37508965-37509035)
chr5 (69-127)||(12665336-12665394)
chr5 (74-127)||(1669792-1669845)
chr5 (156-229)||(5862761-5862834)
chr5 (14-69)||(12665318-12665373)
[»] chr2 (12 HSPs)
chr2 (1-243)||(19090128-19090369)
chr2 (14-229)||(30378363-30378575)
chr2 (69-242)||(30618043-30618215)
chr2 (69-127)||(30660141-30660199)
chr2 (154-235)||(15609720-15609801)
chr2 (151-229)||(13293582-13293660)
chr2 (16-69)||(30660125-30660178)
chr2 (148-243)||(17913867-17913962)
chr2 (18-69)||(30618029-30618080)
chr2 (158-240)||(16399693-16399775)
chr2 (148-227)||(16349996-16350076)
chr2 (151-207)||(40355599-40355655)
[»] chr4 (16 HSPs)
chr4 (1-127)||(23426995-23427121)
chr4 (14-229)||(1180139-1180353)
chr4 (69-241)||(51084558-51084730)
chr4 (69-238)||(54234425-54234592)
chr4 (148-229)||(33686643-33686724)
chr4 (68-243)||(33880872-33881043)
chr4 (148-220)||(39939107-39939179)
chr4 (73-227)||(5382259-5382413)
chr4 (152-243)||(21680541-21680631)
chr4 (19-69)||(33881005-33881055)
chr4 (155-207)||(15521732-15521784)
chr4 (79-121)||(40711781-40711823)
chr4 (15-69)||(51084541-51084595)
chr4 (14-67)||(5382382-5382435)
chr4 (151-216)||(20452606-20452671)
chr4 (191-243)||(35452035-35452087)
[»] chr6 (8 HSPs)
chr6 (20-243)||(17314227-17314450)
chr6 (1-127)||(29426952-29427077)
chr6 (171-227)||(14265797-14265853)
chr6 (175-242)||(23103098-23103165)
chr6 (73-127)||(14265704-14265758)
chr6 (160-205)||(15973838-15973883)
chr6 (184-229)||(24610606-24610651)
chr6 (181-229)||(4450695-4450743)
[»] scaffold0004 (2 HSPs)
scaffold0004 (14-110)||(34032-34128)
scaffold0004 (148-243)||(35193-35288)
[»] chr8 (7 HSPs)
chr8 (1-126)||(42280154-42280279)
chr8 (151-229)||(27418709-27418787)
chr8 (159-243)||(13582651-13582735)
chr8 (93-127)||(14266218-14266252)
chr8 (150-207)||(14266141-14266198)
chr8 (156-212)||(40084371-40084427)
chr8 (183-227)||(42281202-42281246)
[»] chr7 (8 HSPs)
chr7 (156-243)||(32521145-32521232)
chr7 (94-229)||(9823499-9823633)
chr7 (94-229)||(10725424-10725558)
chr7 (52-113)||(31932941-31933002)
chr7 (148-229)||(35224746-35224828)
chr7 (169-225)||(15962539-15962596)
chr7 (155-243)||(22807850-22807938)
chr7 (156-229)||(9047356-9047428)
[»] chr1 (11 HSPs)
chr1 (70-229)||(2753080-2753237)
chr1 (90-240)||(13142794-13142943)
chr1 (148-229)||(32018673-32018755)
chr1 (168-229)||(51960329-51960390)
chr1 (169-243)||(31375070-31375144)
chr1 (1-127)||(33710561-33710687)
chr1 (177-221)||(44836060-44836104)
chr1 (68-127)||(42069570-42069629)
chr1 (17-66)||(2753204-2753253)
chr1 (148-235)||(44327344-44327431)
chr1 (156-226)||(25690161-25690231)
[»] scaffold0369 (1 HSPs)
scaffold0369 (158-226)||(10565-10633)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40709474 - 40709238
Alignment:
Q  1 tccaagaaaatcgtgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatat 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40709474 tccaataaaatcgtgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatat 40709375  T
Q  101 aatgtagtatatataattacaaatatacaggtcggcttgttggcctatagtaggc-ttttttataagtcttagtctgacctatttaaattaatgaccttt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40709374 aatgtagtatatataattacaaatatacaggtcggcttgttggcc--tagtaggctttttttataagtcttagtctgacctatttaaattaatgaccttt 40709277  T
Q  200 ttaaaaagtttgagcctaacctatttaatacatgagcta 238  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  40709276 ttaaaaaatttgagcctaacctatttaataaatgagcta 40709238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 4957807 - 4957632
Alignment:
Q  69 attttgtagaggctaatacacgtgtattatataatgtagtatatata--attacaaatatacaggtcggcttgtt-ggcctatagtaggcttttttataa 165  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||  |||||| || ||  ||||||| || | ||||||  |||||||||| |||||    
T  4957807 attttgtagaggctcatacgcgtgtattatataatgtagtatatatataattacacatctatgggtcggcctgataggccta--gtaggcttttctataa 4957710  T
Q  166 gtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    | ||||| ||  |||||||||||||| || |||||||||||| || ||||| |||||||||||| | || ||||||||    
T  4957709 gccttagcctagcctatttaaattaacgaactttttaaaaagcttaagccttacctatttaataaacgaactaggccg 4957632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 50385372 - 50385266
Alignment:
Q  18 gagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataat---gtagtatatat 114  Q
    |||||| ||| || |||||||||||||||||||  || || |||| |||||||||| |||||| |||||| |||||||||||||||   |||||||||||    
T  50385372 gagctaacacgtccattttgtagaggctaatacatgtatactataaaatgtattttatagaggttaatacgcgtgtattatataatatagtagtatatat 50385273  T
Q  115 aattaca 121  Q
    |||||||    
T  50385272 aattaca 50385266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 6130725 - 6130650
Alignment:
Q  148 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctat 223  Q
    |||||| ||||| |||||| |||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||    
T  6130725 tagtagacttttctataagccttagtctaacctatttaaattaatgaactttttaaaaagcttgagcttaacctat 6130650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 50385233 - 50385182
Alignment:
Q  178 cctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    ||||||||||||||||| |||||||||||  ||||| |||||||||||||||    
T  50385233 cctatttaaattaatgagctttttaaaaaacttgagtctaacctatttaata 50385182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 43106641 - 43106682
Alignment:
Q  69 attttgtagaggctaatacacgtgtattatataatgtagtat 110  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  43106641 attttatagaagctaatacacgtgtattatataatgtagtat 43106682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 43107858 - 43107927
Alignment:
Q  174 ctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    |||||||||||||||||||||  ||||||||||| ||||||  ||| ||||||||| | ||| |||||||    
T  43107858 ctgacctatttaaattaatgaattttttaaaaagcttgagctcaacttatttaataaacgagttaggccg 43107927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 4957814 - 4957770
Alignment:
Q  25 cacatcgattttgtagaggctaatactcgtgtattatataatgta 69  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||    
T  4957814 cacatccattttgtagaggctcatacgcgtgtattatataatgta 4957770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 16930436 - 16930357
Alignment:
Q  150 gtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    |||||||||| |||||| ||| | | ||||||| ||||||||  | |||||| ||||| ||||||||||||||| |||||    
T  16930436 gtaggcttttctataagcctttgcccgacctatataaattaacaaactttttgaaaagcttgagcctaacctatataata 16930357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 28283482 - 28283723
Alignment:
Q  1 tccaagaaaatcgtgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatat 100  Q
    ||||| |||||  |||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||||| |||| |||||||    
T  28283482 tccaataaaattttgtagagctaacacatccattttatagaggctaatacacgtgtattataaaatgtattttatagaggctaatacgcgtgcattatat 28283581  T
Q  101 aatgtagtatatataattacaaatatacaggtcgg-cttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatgaccttt 199  Q
    ||||||||||||||||||||| ||||| |||| || ||  | ||||  |||||||||||| |||||| ||||| ||  ||||||||||| ||||| ||||    
T  28283582 aatgtagtatatataattacatatatataggttggtctgataggcc--tagtaggcttttctataagccttagcctagcctatttaaataaatgaacttt 28283679  T
Q  200 ttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    |||||||  |||||||| |||||||||||| | |||||||||||    
T  28283680 ttaaaaaacttgagccttacctatttaataaacgagctaggccg 28283723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 37509035 - 37508965
Alignment:
Q  148 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaa 218  Q
    |||||||||||| ||||| |||||| ||| |||||||||||||| || |||||||||||||||||||||||    
T  37509035 tagtaggcttttctataaatcttagcctggcctatttaaattaacgaactttttaaaaagtttgagcctaa 37508965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 12665336 - 12665394
Alignment:
Q  69 attttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 127  Q
    |||||| | |||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  12665336 attttgcataggctaatacacgtgtattatataatgtagttaatataattacacatata 12665394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 1669845 - 1669792
Alignment:
Q  74 gtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 127  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  1669845 gtagaagctaataaacgtgtattatataatggagtatatataattacacatata 1669792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 5862834 - 5862761
Alignment:
Q  156 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    ||||||||||| | ||| ||||| ||||||||||||||| |||||||| |||| ||| |||||| |||||||||    
T  5862834 ttttttataagccatagcctgacttatttaaattaatgagctttttaacaagtctgaacctaacatatttaata 5862761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 12665318 - 12665373
Alignment:
Q  14 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 69  Q
    ||||| |||| |||||| |||||| | |||||||||| ||||||||||||||||||    
T  12665318 tgtagggctaacacatccattttgcataggctaatacacgtgtattatataatgta 12665373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 19090128 - 19090369
Alignment:
Q  1 tccaagaaaatcgtgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatat 100  Q
    ||||| |||||  ||||||||||  ||||| ||||||||||||||||||  ||||||||||| |||||||||| |||||||||||||  |||||||||||    
T  19090128 tccaataaaattttgtagagctaatacatccattttgtagaggctaatatacgtgtattataaaatgtattttatagaggctaatacgagtgtattatat 19090227  T
Q  101 aatgtagtatatataattacaaatatacaggtcggcttg-ttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatgaccttt 199  Q
    ||||||||||| ||||||||| |||||  |||| || || | ||||  |||||||||||| |||| | | ||| ||  ||||||||||||||||| ||||    
T  19090228 aatgtagtatacataattacacatatatgggtcagcctgataggcc--tagtaggcttttctatatgccctagcctagcctatttaaattaatgaacttt 19090325  T
Q  200 ttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    |||||||| |||||||| |||||||||||| | |||||| ||||    
T  19090326 ttaaaaagcttgagccttacctatttaataaacgagctacgccg 19090369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 30378575 - 30378363
Alignment:
Q  14 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 113  Q
    |||||||||| |||||| || |||||||||||||||| ||||||||||| |||||||||| ||||||||||||  ||| |||||||||||||||||||||    
T  30378575 tgtagagctaacacatccatattgtagaggctaatacgcgtgtattataaaatgtattttatagaggctaatatgcgtatattatataatgtagtatata 30378476  T
Q  114 taattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgag 213  Q
    |||||||| |||||  || || | || | |  | ||||| |||||| |||||| ||||  ||  ||||||||||||||||| |||||| ||||| |||||    
T  30378475 taattacacatatatgggccgacctgatag-gtttagta-gcttttctataagccttatcctagcctatttaaattaatgagcttttt-aaaagcttgag 30378379  T
Q  214 cctaacctatttaata 229  Q
     ||||| |||||||||    
T  30378378 tctaacttatttaata 30378363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 242
Target Start/End: Original strand, 30618043 - 30618215
Alignment:
Q  69 attttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtc 168  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||   | || | || | | || ||||||| |||| |||||       
T  30618043 attttgtagaggctaatacgcgtgtattatataatgtaatatatataattacacatatatgcgccgacctgataggct-tagtaggtttttctataaaca 30618141  T
Q  169 ttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggcc 242  Q
    |||   ||||| |||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  30618142 ttaacatgacccatttaaattaataagctttttaaaaagcttgagcctaacctatttaataaatgagctaggcc 30618215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 30660141 - 30660199
Alignment:
Q  69 attttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 127  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  30660141 attttgtagaggctaatacgcgtgtattatataatgtaatatatataattacacatata 30660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 15609720 - 15609801
Alignment:
Q  154 gcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgag 235  Q
    |||||| |||||  ||||| ||||||||||||||||| ||  |||||||||||| ||||||||||||||||||||| |||||    
T  15609720 gcttttctataacccttagactgacctatttaaattattgtgctttttaaaaagcttgagcctaacctatttaatagatgag 15609801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 13293660 - 13293582
Alignment:
Q  151 taggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    ||||||| | |||||| ||||  |||| || ||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  13293660 taggcttgtctataagccttaacctgatctgtttaaattaatgagctttttaaaaagtttgaccctaatctatttaata 13293582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 30660125 - 30660178
Alignment:
Q  16 tagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 69  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||||    
T  30660125 tagagctaacaaatccattttgtagaggctaatacgcgtgtattatataatgta 30660178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 17913867 - 17913962
Alignment:
Q  148 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    ||||||| |||| |||||| ||||  ||  ||||||||||||||| | |||||||||||| ||||| || |||||||||||| | ||| |||||||    
T  17913867 tagtaggtttttctataagccttaacctagcctatttaaattaataaactttttaaaaagcttgagtcttacctatttaataaaggagttaggccg 17913962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 30618029 - 30618080
Alignment:
Q  18 gagctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 69  Q
    |||||| || ||| ||||||||||||||||||| ||||||||||||||||||    
T  30618029 gagctaacaaatccattttgtagaggctaatacgcgtgtattatataatgta 30618080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 16399775 - 16399693
Alignment:
Q  158 ttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctagg 240  Q
    |||||||||| ||| |||||| ||||||||||| |   |||| |||||||||| |||||||| ||||||||| ||||| ||||    
T  16399775 ttttataagtattaatctgacatatttaaattagttgactttctaaaaagtttaagcctaacatatttaataaatgagttagg 16399693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 16349996 - 16350076
Alignment:
Q  148 tagtaggcttttt-tataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaa 227  Q
    ||||||||||||| |||||||||||   |||||||||||||||||| || |||| || ||| ||||| ||||| |||||||    
T  16349996 tagtaggctttttgtataagtcttaacttgacctatttaaattaataacattttgaataagcttgagtctaacgtatttaa 16350076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 40355655 - 40355599
Alignment:
Q  151 taggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaag 207  Q
    |||||||||||||||| || ||||||||||| |||||||| |   ||||||||||||    
T  40355655 taggcttttttataagcctaagtctgacctaattaaattagtaggctttttaaaaag 40355599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 23427121 - 23426995
Alignment:
Q  1 tccaagaaaatcgtgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatat 100  Q
    ||||| |||||  ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23427121 tccaataaaattttgtagagctagcacatccattttgtagaggttaatacgcgtgtattatataatgtattttgtagaggctaatacacgtgtattatat 23427022  T
Q  101 aatgtagtatatataattacaaatata 127  Q
    || ||| |||||||||||||| |||||    
T  23427021 aacgtaatatatataattacacatata 23426995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 1180353 - 1180139
Alignment:
Q  14 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 113  Q
    ||||||| || |||||  |||||||| |||||||||| | ||||||||| |||||||||| |||||| |||||   ||||||||||||||||||||||||    
T  1180353 tgtagagttaacacattcattttgtaaaggctaatacgcctgtattataaaatgtattttatagaggttaatatgagtgtattatataatgtagtatata 1180254  T
Q  114 taattacaaatatacaggtcgg-cttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttga 212  Q
    || ||||| |||||  |||||| ||  | ||||  |||||| ||||| |||||| ||||||||  ||||||||||||||||| |||||||||||| ||||    
T  1180253 tatttacacatatatgggtcggtctgataggcc--tagtagacttttctataagccttagtctagcctatttaaattaatgaactttttaaaaagcttga 1180156  T
Q  213 gcctaacctatttaata 229  Q
    |  | ||||||||||||    
T  1180155 gtattacctatttaata 1180139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 51084558 - 51084730
Alignment:
Q  69 attttgtagaggctaatacacgtgtattatataatgtagtatatataa-ttacaaatatacaggtcggcttgtt-ggcctatagtaggcttttttataag 166  Q
    ||||||||||||  |||||  ||||||| ||||||||||||||||||| ||| | |||||   | ||||| | | ||||||  |||||||||| ||||||    
T  51084558 attttgtagaggtcaatacgtgtgtattgtataatgtagtatatataaattatacatatatgagccggctagataggccta--gtaggcttttctataag 51084655  T
Q  167 tcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggc 241  Q
     || || ||  ||||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||    
T  51084656 cctgagcctagcctatttaaattaatgagctttttaaaaagcttgagcctaacctatttaataaacgagctaggc 51084730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 238
Target Start/End: Original strand, 54234425 - 54234592
Alignment:
Q  69 attttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcggcttgtt-ggcctatagtaggcttttttataagt 167  Q
    ||||||||||||  ||||   ||||||| |||||||||||||||||||||||| |||||   | || || | | ||||||  |||||||||| ||||||     
T  54234425 attttgtagaggtcaatatgtgtgtattgtataatgtagtatatataattacacatatatgagccgactagataggccta--gtaggcttttctataagc 54234522  T
Q  168 cttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagcta 238  Q
    || |||||| ||||||||| ||||||| |||||||||||| ||||||  ||||||||||| | ||||||||    
T  54234523 ctcagtctggcctatttaa-ttaatgagctttttaaaaagcttgagctaaacctatttaaaaaatgagcta 54234592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 33686724 - 33686643
Alignment:
Q  148 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    |||||||||||||||||||| ||||||||||| |||||||||| | |  ||||||||||| ||||| ||||||||| |||||    
T  33686724 tagtaggcttttttataagttttagtctgacccatttaaattattaaattttttaaaaagcttgagtctaacctatataata 33686643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 243
Target Start/End: Complemental strand, 33881043 - 33880872
Alignment:
Q  68 tattttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcggcttgtt-ggcctatagtaggcttttttataag 166  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||||   |||| ||| |  |  || |||| | ||||||  ||||| |||| || |||    
T  33881043 tattttgtagaggttaatacgcgtgtattatataatgtaatatatat---tacacatacatggaccgacttgataggccta--gtaggtttttctacaag 33880949  T
Q  167 tcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
      |||| || |||||||| || |||||| |||||||||||||||||||||||| ||||||||| | ||| |||||||    
T  33880948 cgttagcctaacctattttaaataatgagctttttaaaaagtttgagcctaacatatttaataaacgagttaggccg 33880872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 39939107 - 39939179
Alignment:
Q  148 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacc 220  Q
    |||||||||||  || ||| |||||| ||||||||||||||||||||  ||||||||| |||||| |||||||    
T  39939107 tagtaggctttcctacaagacttagtttgacctatttaaattaatgagttttttaaaatgtttgaacctaacc 39939179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 5382413 - 5382259
Alignment:
Q  73 tgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcgg-cttgttggcctatagtaggcttttttataagtctta 171  Q
    |||||||||||||| ||||||||| ||||||| | |||||||||||||| |||||  || ||| || || ||||   ||||||||||| |||||| ||||    
T  5382413 tgtagaggctaataaacgtgtattttataatggaatatatataattacatatata-tggccggtctggtaggcc--cagtaggcttttctataagcctta 5382317  T
Q  172 gtctgacctatttaaattaa--tgacctttttaaaaagtttgagcctaacctatttaa 227  Q
      ||  ||||||||||||||   ||  ||||||||||| ||||||||||| |||||||    
T  5382316 acctagcctatttaaattaacgcgagttttttaaaaagcttgagcctaacttatttaa 5382259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 21680541 - 21680631
Alignment:
Q  152 aggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    |||||||| |||||||||||  ||||||||||||||||||| |  ||||| ||||| |||| |||||||||| ||||| | || ||||||||    
T  21680541 aggcttttatataagtcttaacctgacctatttaaattaat-aagttttttaaaagcttgatcctaacctatataataaaagaactaggccg 21680631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 33881055 - 33881005
Alignment:
Q  19 agctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 69  Q
    |||||||| ||| |||||||||||| |||||| ||||||||||||||||||    
T  33881055 agctagcaaatctattttgtagaggttaatacgcgtgtattatataatgta 33881005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 15521732 - 15521784
Alignment:
Q  155 cttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaag 207  Q
    ||||||||||||||| ||||||||||| ||||||||||   ||||||||||||    
T  15521732 cttttttataagtctaagtctgacctaattaaattaataggctttttaaaaag 15521784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 40711823 - 40711781
Alignment:
Q  79 ggctaatacacgtgtattatataatgtagtatatataattaca 121  Q
    |||||||| || |||||||||||| ||||||||||||||||||    
T  40711823 ggctaatagacatgtattatataacgtagtatatataattaca 40711781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 51084541 - 51084595
Alignment:
Q  15 gtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 69  Q
    |||||||||||||||| ||||||||||||  |||||  ||||||| |||||||||    
T  51084541 gtagagctagcacatccattttgtagaggtcaatacgtgtgtattgtataatgta 51084595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 5382435 - 5382382
Alignment:
Q  14 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatg 67  Q
    |||||| |||||||||| ||| ||||||||||||||  |||||||| |||||||    
T  5382435 tgtagacctagcacatccattgtgtagaggctaataaacgtgtattttataatg 5382382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 20452671 - 20452606
Alignment:
Q  151 taggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcct 216  Q
    |||||||||||||||| ||||| |||||||||||| || |||   |||| ||||||| ||||||||    
T  20452671 taggcttttttataagccttagcctgacctatttatataaatagactttataaaaagcttgagcct 20452606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 35452087 - 35452035
Alignment:
Q  191 atgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    |||| |||||||||||||||||| |||| |||||||||| | ||| |||||||    
T  35452087 atgagctttttaaaaagtttgagtctaatctatttaataaacgagttaggccg 35452035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 17314227 - 17314450
Alignment:
Q  20 gctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatatataatta 119  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||  |||||||||||||||||||||||  ||||    
T  17314227 gctagcacatccattttgtagaggttaatactcgtgtattatataatgtattttgtaaaggttgatacatatgtattatataatgtagtatatactatta 17314326  T
Q  120 caaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatga-cctttttaaaaagtttgagcctaa 218  Q
    || |||||  ||| ||  |  | | || ||||||| |||| ||||||||||||  |||||||||||||| ||| |   ||||||||||| ||||| ||||    
T  17314327 cacatatatgggttggtctaatagact-tagtaggattttctataagtcttagcatgacctatttaaataaataagtttttttaaaaagcttgagtctaa 17314425  T
Q  219 cctatttaatacatgagctaggccg 243  Q
    | ||||||||| | |||||||||||    
T  17314426 catatttaataaacgagctaggccg 17314450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 29427077 - 29426952
Alignment:
Q  1 tccaagaaaatcgtgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatat 100  Q
    ||||| |||||  |||||||||| |||||| |||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  29427077 tccaataaaattttgtagagctaacacatctattt-gtagaggttaatactcgtgtattataaaatgtattttatagaggctaatacgcgtgtattatat 29426979  T
Q  101 aatgtagtatatataattacaaatata 127  Q
    ||||||||||||||||||||| |||||    
T  29426978 aatgtagtatatataattacacatata 29426952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 14265797 - 14265853
Alignment:
Q  171 agtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaa 227  Q
    |||||| ||||||||| ||||||| |||||||||||| ||||| |||||||||||||    
T  14265797 agtctgccctatttaagttaatgagctttttaaaaagcttgagtctaacctatttaa 14265853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 23103098 - 23103165
Alignment:
Q  175 tgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggcc 242  Q
    ||||||||||||||||||    ||||||||||| ||||||||||| |||||| || ||||| ||||||    
T  23103098 tgacctatttaaattaattgattttttaaaaagcttgagcctaacttatttattaaatgagttaggcc 23103165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 14265704 - 14265758
Alignment:
Q  73 tgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 127  Q
    ||||||||||||||| | |||||| | |||||||||||||| ||||| |||||||    
T  14265704 tgtagaggctaatacgcatgtattttgtaatgtagtatataaaattaaaaatata 14265758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 15973838 - 15973883
Alignment:
Q  160 ttataagtcttagtctgacctatttaaattaatgacctttttaaaa 205  Q
    |||||||||||| ||| | |||||||||||||||| ||||||||||    
T  15973838 ttataagtcttaatctaatctatttaaattaatgaactttttaaaa 15973883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 24610606 - 24610651
Alignment:
Q  184 taaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    |||||||||||  |||||||||||||||||  ||||||||||||||    
T  24610606 taaattaatgaggtttttaaaaagtttgagtgtaacctatttaata 24610651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 4450695 - 4450743
Alignment:
Q  181 atttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    ||||||||||| || ||||||||||||||| ||  ||||||||||||||    
T  4450695 atttaaattaacgaactttttaaaaagttttagtttaacctatttaata 4450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 34032 - 34128
Alignment:
Q  14 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtat 110  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  34032 tgtagagctaacacatccattttgtagaggctaatacgcgtgtattataacatgtattttatagaggctaatacacgtgtattatataatgtagtat 34128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 35193 - 35288
Alignment:
Q  148 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    |||||||||||| ||||||  |||| ||  ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |  ||||||||||    
T  35193 tagtaggcttttctataagcattagcctagcctatttaaattaatgagctttttaaaaagcttgagcctaacctatttaataaacaagctaggccg 35288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 42280154 - 42280279
Alignment:
Q  1 tccaagaaaatcgtgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatat 100  Q
    ||||| |||||  |||||||||| |||||| |||||||||||| |||||| | ||||||||| |||||||||| |||||  |||||| ||||||||||||    
T  42280154 tccaataaaattttgtagagctaacacatccattttgtagaggttaatacgcatgtattataaaatgtattttatagagattaatacgcgtgtattatat 42280253  T
Q  101 aatgtagtatatataattacaaatat 126  Q
    ||||||||||||||||||||| ||||    
T  42280254 aatgtagtatatataattacatatat 42280279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 27418709 - 27418787
Alignment:
Q  151 taggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||| |||| ||||    
T  27418709 taggtttttctataagtcttagtctgacctatttaaattgatgagttttttaagaagtttgagcctaacatattcaata 27418787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 13582651 - 13582735
Alignment:
Q  159 tttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    |||||||||||||   ||||||| ||||||||||||  ||||   |||||||||||||||||||| ||||| | ||||| |||||    
T  13582651 tttataagtcttaacttgacctaattaaattaatgagattttgttaaagtttgagcctaacctatataataaacgagctgggccg 13582735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 14266252 - 14266218
Alignment:
Q  93 tattatataatgtagtatatataattacaaatata 127  Q
    ||||||||||||||||||||||||||||| |||||    
T  14266252 tattatataatgtagtatatataattacacatata 14266218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 14266198 - 14266141
Alignment:
Q  150 gtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaag 207  Q
    |||||||||| |||||| ||||| |||||||| | | |||||||| ||||||||||||    
T  14266198 gtaggcttttatataagccttagcctgacctagtaatattaatgagctttttaaaaag 14266141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 40084427 - 40084371
Alignment:
Q  156 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttga 212  Q
    |||| |||||||||||   |||||||||||||||||||  |||| ||||||||||||    
T  40084427 ttttctataagtcttaacttgacctatttaaattaatgtgctttataaaaagtttga 40084371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 42281202 - 42281246
Alignment:
Q  183 ttaaattaatgacctttttaaaaagtttgagcctaacctatttaa 227  Q
    |||||||||||| |||||||||||| ||||| || ||||||||||    
T  42281202 ttaaattaatgaactttttaaaaagcttgagtcttacctatttaa 42281246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 32521232 - 32521145
Alignment:
Q  156 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||| | ||| |||||||    
T  32521232 ttttttacaagtcttagtctgacctatctaaattaatgagctttttaaaaagtttgagtcaaacctatttaataaaagagataggccg 32521145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 9823499 - 9823633
Alignment:
Q  94 attatataatgtagtatatataattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatg 193  Q
    ||||||||||||||||||||||| |||| |||||  ||||||| || | |  | ||||||| ||||||||||| ||||  || |||||||||||||||||    
T  9823499 attatataatgtagtatatataaatacacatatatgggtcggcctgatagg-tctagtagggttttttataagccttaccctaacctatttaaattaatg 9823597  T
Q  194 acctttttaaaaagtttgagcctaacctatttaata 229  Q
       ||||||||||| ||||| |||||||||||||||    
T  9823598 tagtttttaaaaagattgagtctaacctatttaata 9823633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 10725424 - 10725558
Alignment:
Q  94 attatataatgtagtatatataattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatg 193  Q
    ||||||||||||||||||||||| |||| |||||  ||||||| || | |  | ||||||| ||||||||||| ||||  || |||||||||||||||||    
T  10725424 attatataatgtagtatatataaatacacatatatgggtcggcctgatagg-tctagtagggttttttataagccttaccctaacctatttaaattaatg 10725522  T
Q  194 acctttttaaaaagtttgagcctaacctatttaata 229  Q
       ||||||||||| ||||| |||||||||||||||    
T  10725523 tagtttttaaaaagattgagtctaacctatttaata 10725558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 31932941 - 31933002
Alignment:
Q  52 cgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 113  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  31932941 cgtgttttatataatgtattttgtagaggctaatacgcgtctattatataatatagtatata 31933002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 35224746 - 35224828
Alignment:
Q  148 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaa-agtttgagcctaacctatttaata 229  Q
    |||||| ||||| |||||| ||||  |||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||    
T  35224746 tagtagacttttgtataagccttaacctgacctatttaaattaatgagtttttaaaaaaagtttgagcctaacctatttaata 35224828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 15962596 - 15962539
Alignment:
Q  169 ttagtctgacctatttaaattaat-gacctttttaaaaagtttgagcctaacctattt 225  Q
    |||||||||||||||||||||||| ||| |||||| |||||||| |||||||||||||    
T  15962596 ttagtctgacctatttaaattaatggacttttttataaagtttgtgcctaacctattt 15962539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 22807850 - 22807938
Alignment:
Q  155 cttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    ||||||| |||| ||||||||||||||||||| | ||||| |||| | ||||| |||||||| |||| |  | || |||||||||||||    
T  22807850 cttttttctaagccttagtctgacctatttaattaaatgagctttattaaaagcttgagcctgacctttacattaaatgagctaggccg 22807938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 9047356 - 9047428
Alignment:
Q  156 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    |||| |||||| ||||||||  |||||||||||||||| | |||||||||| |||||| ||||  |||||||||    
T  9047356 ttttctataagccttagtctcccctatttaaattaatg-cttttttaaaaaatttgagtctaatatatttaata 9047428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 2753237 - 2753080
Alignment:
Q  70 ttttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcggcttg-ttggcctatagtaggcttttttataagtc 168  Q
    ||||||||||| |||||||||||||||||||||| || |||||||||||||  |||||  |  |||| || | ||||  |||||| ||||| | ||||      
T  2753237 ttttgtagaggttaatacacgtgtattatataatataatatatataattacgcatatatggaccggcatgatcggcc--tagtagacttttctttaagca 2753140  T
Q  169 ttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    |||||||||||||||||||||||| | | | |||||||||||||||||| |||||||||||    
T  2753139 ttagtctgacctatttaaattaataaac-tattaaaaagtttgagcctagcctatttaata 2753080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 13142794 - 13142943
Alignment:
Q  90 gtgtattatataatgtagtatatataattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaatt 189  Q
    ||||||| |||| ||||||||||||||||||| |||||   | ||||| | | |  | |||||||||||| |||||| ||||  ||  ||||||||||||    
T  13142794 gtgtattgtatactgtagtatatataattacacatatatgagccggctagatagg-tctagtaggcttttctataagccttaacctagcctatttaaatt 13142892  T
Q  190 aatgacctttttaaaaagtttgagcctaacctatttaatacatgagctagg 240  Q
    ||||| |||||||||||| ||| ||||||||||||||||| | ||||||||    
T  13142893 aatgagctttttaaaaagcttgtgcctaacctatttaataaacgagctagg 13142943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 32018673 - 32018755
Alignment:
Q  148 tagtaggcttttt-tataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    |||||| |||||| |||||| ||||| ||||||| |||||||| | || |||||||||| |||||||||||||||||||||||    
T  32018673 tagtagcctttttctataagccttagcctgacctgtttaaattgacgagctttttaaaaggtttgagcctaacctatttaata 32018755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 51960329 - 51960390
Alignment:
Q  168 cttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 229  Q
    ||||||||| ||||||||||||||||| |||||| ||||||| ||| |||||||||||||||    
T  51960329 cttagtctgtcctatttaaattaatgatcttttttaaaagttagaggctaacctatttaata 51960390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 31375144 - 31375070
Alignment:
Q  169 ttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 243  Q
    |||| ||| |||||||||| |||||| |||||||||||| |||||| ||||||||||||||   |||||||||||    
T  31375144 ttagcctggcctatttaaaataatgagctttttaaaaagcttgagcataacctatttaataaccgagctaggccg 31375070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 33710687 - 33710561
Alignment:
Q  1 tccaagaaaatcgtgtagagctagcac-atcgattttgtagaggctaatactcgtgtattatataatgta-ttttgtagaggctaatacacgtgtattat 98  Q
    ||||| |||||  |||| ||||||||| ||| ||||  ||| ||||||||   ||||||||||||||||| ||||||||||| |||||| ||||| ||||    
T  33710687 tccaataaaattttgtaaagctagcaccatctatttaatagtggctaatatatgtgtattatataatgtatttttgtagaggttaatacgcgtgt-ttat 33710589  T
Q  99 ataatgtagtatatataattacaaatata 127  Q
    ||||||| | ||||||||||||| |||||    
T  33710588 ataatgt-gcatatataattacacatata 33710561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 44836060 - 44836104
Alignment:
Q  177 acctatttaaattaatgacctttttaaaaagtttgagcctaacct 221  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||    
T  44836060 acctatttaaattaatgagctttttaaaaagtttaagcctaacct 44836104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 42069629 - 42069570
Alignment:
Q  68 tattttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 127  Q
    ||||||||| ||| ||||||   ||||||||||||||||||||||||||||||| |||||    
T  42069629 tattttgtataggttaatacgtttgtattatataatgtagtatatataattacacatata 42069570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 2753253 - 2753204
Alignment:
Q  17 agagctagcacatcgattttgtagaggctaatactcgtgtattatataat 66  Q
    ||||||||||||||  ||||||||||| |||||| |||||||||||||||    
T  2753253 agagctagcacatcctttttgtagaggttaatacacgtgtattatataat 2753204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 44327344 - 44327431
Alignment:
Q  148 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgag 235  Q
    ||||||||||||  |||||| |||  |||||||||||||||||| || |||||||||||  || |  ||||||||||| ||| |||||    
T  44327344 tagtaggcttttcaataagttttaacctgacctatttaaattaaagaactttttaaaaaacttaaatctaacctattttataaatgag 44327431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 25690161 - 25690231
Alignment:
Q  156 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctattta 226  Q
    |||| ||||| ||||| ||| || ||||| ||||||||| | ||||||||||||||| |||||| ||||||    
T  25690161 ttttctataaatcttaatctaacttattttaattaatgaacattttaaaaagtttgaacctaacatattta 25690231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 10565 - 10633
Alignment:
Q  158 ttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctattta 226  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  10565 ttttataagtcttagtctgacttatttaaattaatgagctttttaaaaagtatgagcttaacatattta 10633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University