View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2682_low_15 (Length: 227)
Name: NF2682_low_15
Description: NF2682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2682_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 43209699 - 43209911
Alignment:
| Q |
11 |
tgtcatgtgatgtaagtacctggcaacagagaaggtccaaggggtgacaagttgatcctcagtagcacaatcttcaccgtagacatcctcaacaccgcca |
110 |
Q |
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| T |
43209699 |
tgtcatgtgatgtaagtacctggcaacagagaaggtccaaggggtgacaagttgatcctcagtagcacaatcttcaccgtagacatcctcaacaccgcca |
43209798 |
T |
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| Q |
111 |
ccaacggcggatcttgggctgaggtccagcaccgactcaccatctctaaaggacttaagtgtgctctccatcttctttcagaatgattgatgataacagt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
43209799 |
ccaacggcggatcttgggctgaggtccagcaccgactcaccatctctaaaggacttaagtgtgctctccatcttcttccaaaatgattgatgataacagt |
43209898 |
T |
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| Q |
211 |
agtttgtttgttt |
223 |
Q |
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||||||||||||| |
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| T |
43209899 |
agtttgtttgttt |
43209911 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 51495662 - 51495576
Alignment:
| Q |
26 |
gtacctggcaacagagaaggtccaaggggtgacaagttgatcctcagtagcacaatcttcaccgtagacatcctcaacaccgccacc |
112 |
Q |
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| T |
51495662 |
gtacctagcaacagagaaattccatggtgtgataagttgatcctctgtagcactatcctcaccatagaggtccttaacaccaccacc |
51495576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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