View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2682_low_5 (Length: 299)
Name: NF2682_low_5
Description: NF2682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2682_low_5 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0889 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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| [»] scaffold1033 (2 HSPs) |
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| [»] scaffold1029 (2 HSPs) |
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| [»] scaffold1983 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 28565235 - 28565403
Alignment:
| Q |
130 |
tagtgtgatgtactttagtcaccttcacattatggtataagattcattctagttacttggcacgggaannnnnnnnnnnnnnnncccgttagtaacagta |
229 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28565235 |
tagtgtcatttactttagtcaccttcacattatggtataagattcattctagttacttggcacgggaattttttaattttttt-cccgttagtaacagta |
28565333 |
T |
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| Q |
230 |
aaaaccaagtaacatcacaggtgaagaaacatcagctctcattactggttcttctctttctctttatttt |
299 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28565334 |
acaaccaagtaacatcacaggtgaagaaacatcagctctcattactggttcttctctttctctttatttt |
28565403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 28565167 - 28565238
Alignment:
| Q |
28 |
aataattgaataatcgacttatactgattaaattcatctcaacaatgtgatgacaatcacaaactctttagt |
99 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |
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| T |
28565167 |
aataattgaataatcgacttatactgattaaatgcatctcaacaatgtgatgacaatcaaaaaccctttagt |
28565238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 28579209 - 28579254
Alignment:
| Q |
137 |
atgtactttagtcaccttcacattatggtataagattcattctagt |
182 |
Q |
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| T |
28579209 |
atgtactttagtcaccttgacaacatggtataagattcattttagt |
28579254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 419 - 304
Alignment:
| Q |
35 |
gaataatcgacttatactgattaaattcatctcaacaatgtgatgacaatcacaaactctttagtttcaagtttatataccaaacctttaaaatgtagtg |
134 |
Q |
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| T |
419 |
gaataatcaacttgcacagattaaatgcatctgaacaacgtgatgacaatcacagactctttagattcaactttacgtaccaaaccattaaaatgtagtg |
320 |
T |
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| Q |
135 |
tgatgtactttagtca |
150 |
Q |
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| |||||||||||||| |
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| T |
319 |
tcatgtactttagtca |
304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 623 - 508
Alignment:
| Q |
35 |
gaataatcgacttatactgattaaattcatctcaacaatgtgatgacaatcacaaactctttagtttcaagtttatataccaaacctttaaaatgtagtg |
134 |
Q |
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|||||||| |||| || |||||||| ||||| ||||| ||||||||||||||| ||||||||| ||||| |||| ||||||||| ||||||||||||| |
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| T |
623 |
gaataatcaacttgcacagattaaatgcatctgaacaacgtgatgacaatcacagactctttagattcaactttacgtaccaaaccattaaaatgtagtg |
524 |
T |
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| Q |
135 |
tgatgtactttagtca |
150 |
Q |
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| |||||||||||||| |
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| T |
523 |
tcatgtactttagtca |
508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 26990148 - 26990222
Alignment:
| Q |
54 |
attaaattcatctcaacaatgtgatgacaatcacaaactctttagtttcaagtttatataccaaacctttaaaatg |
129 |
Q |
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| T |
26990148 |
attaaatgcatctcaacaatgtgacatctatcacaaactctttagtttcaagtttatata-caaacctttaaaatg |
26990222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 667 - 597
Alignment:
| Q |
112 |
taccaaacctttaaaatgtagtgtgatgtactttagtcaccttcacattatggtataagattcattctagt |
182 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
667 |
taccatacctttaaaatgtagtgtcatgtactttagtcaccttgacaacatggtataagattcattttagt |
597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 730 - 667
Alignment:
| Q |
32 |
attgaataatcgacttatactgattaaattcatctcaacaatgtgatgacaatcacaaactctt |
95 |
Q |
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|||||||||| ||||| ||||||||||| |||||| ||||||||||||| |||||||||||| |
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| T |
730 |
attgaataattgacttgcactgattaaatggatctcagcaatgtgatgacagtcacaaactctt |
667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 667 - 597
Alignment:
| Q |
112 |
taccaaacctttaaaatgtagtgtgatgtactttagtcaccttcacattatggtataagattcattctagt |
182 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
667 |
taccatacctttaaaatgtagtgtcatgtactttagtcaccttgacaacatggtataagattcattttagt |
597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 730 - 667
Alignment:
| Q |
32 |
attgaataatcgacttatactgattaaattcatctcaacaatgtgatgacaatcacaaactctt |
95 |
Q |
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|||||||||| ||||| ||||||||||| |||||| ||||||||||||| |||||||||||| |
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| T |
730 |
attgaataattgacttgcactgattaaatggatctcagcaatgtgatgacagtcacaaactctt |
667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1983 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold1983
Description:
Target: scaffold1983; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 322 - 401
Alignment:
| Q |
112 |
taccaaacctttaaaatgtagtgtgatgtactttagtcaccttcacattatggtataagattcattctagttacttggcac |
192 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||| |||| || |||||| |
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| T |
322 |
taccaaacctttaaaatgtagtgtcatgtactttagtcacc-tagcaacatggtataagattcattttagtcacgtggcac |
401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1983; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 771 - 829
Alignment:
| Q |
240 |
aacatcacaggtgaagaaacatcagctctcattactggttcttctctttctctttattt |
298 |
Q |
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||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
771 |
aacatcataggagaagaaacatcagctctcattatcggttcctctctttctctttattt |
829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1983; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 257 - 322
Alignment:
| Q |
30 |
taattgaataatcgacttatactgattaaattcatctcaacaatgtgatgacaatcacaaactctt |
95 |
Q |
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|||||||||||| ||||| ||||||||| | |||||| ||||||||||||| ||| |||||||| |
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| T |
257 |
taattgaataattgacttgcactgattaattggatctcagcaatgtgatgacagtcagaaactctt |
322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 20995122 - 20995179
Alignment:
| Q |
54 |
attaaattcatctcaacaatgtgatgacaatcacaaactctttagtttcaagtttata |
111 |
Q |
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||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
20995122 |
attaaatgcatctcaacaatgtgacatctatcacaaactctttagtttcaagtttata |
20995179 |
T |
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