View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2682_low_7 (Length: 275)
Name: NF2682_low_7
Description: NF2682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2682_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 13038333 - 13038225
Alignment:
| Q |
17 |
catccgatacacaagccacaccaatgaccaccttctgggaatgacatcaaaattgttttttcgtgaactaagagaaaagacagacatcatagacataccg |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
13038333 |
catccgatacacaggccacaccaatgaccaccttctgggaatgacatcaaaattgttttttcgtgaactaagagaaaagacaaacatcatagacatactg |
13038234 |
T |
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| Q |
117 |
actaagctg |
125 |
Q |
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||||||||| |
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| T |
13038233 |
actaagctg |
13038225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 13108341 - 13108233
Alignment:
| Q |
17 |
catccgatacacaagccacaccaatgaccaccttctgggaatgacatcaaaattgttttttcgtgaactaagagaaaagacagacatcatagacataccg |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
13108341 |
catccgatacacaggccacaccaatgaccaccttctgggaatgacatcaaaattgttttttcgtgaactaagagaaaagacaaacatcatagacatactg |
13108242 |
T |
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| Q |
117 |
actaagctg |
125 |
Q |
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||||||||| |
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| T |
13108241 |
actaagctg |
13108233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 13038166 - 13038132
Alignment:
| Q |
241 |
ttataagagtgaccataatttacaagcttattccc |
275 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
13038166 |
ttatcagagtgaccataatttacaagcttattccc |
13038132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 13108174 - 13108140
Alignment:
| Q |
241 |
ttataagagtgaccataatttacaagcttattccc |
275 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
13108174 |
ttatcagagtgaccataatttacaagcttattccc |
13108140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 50269635 - 50269688
Alignment:
| Q |
21 |
cgatacacaagccacaccaatgaccaccttctgggaatgacatcaaaattgttt |
74 |
Q |
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||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||| |
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| T |
50269635 |
cgatacacaagccacaccattgaccatcttctaggaatgacaccaaaattgttt |
50269688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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