View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2683-Insertion-1 (Length: 985)
Name: NF2683-Insertion-1
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683-Insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 735; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 8 - 983
Target Start/End: Original strand, 37201019 - 37201976
Alignment:
| Q |
8 |
actgttaattgttcttgtgggaatagagaggtttctatggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||||| | |||||||||||||||||||||| | |
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|
| T |
37201019 |
actgttaattgttcttgtgggaataaagaggtttctatggattatggattgttcatcacatatccacttagaagtgaggacactttggagtctattgcta |
37201118 |
T |
|
| Q |
108 |
aagataccaagattgaggctgagttgttacagaggtacaaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaaggttagnn |
207 |
Q |
| |
|
| | | | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37201119 |
agggtgcagagattgaggctgagttgctgcagaggtacaaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaaggttagtt |
37201218 |
T |
|
| Q |
208 |
nnnnnnnnnnnnngtcatggtttaattgatttctggtatgaactctaaatggggattggggattttgtactttctgtaaagtgggtttatgaaatagcac |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
37201219 |
ttttaatttttctgtcatggtttaattgatttc-------aactctatatggggatt-------ttgtactttctgtaaagtgggtttatgaaatagcac |
37201304 |
T |
|
| Q |
308 |
attagcacacattgttgcttattttgattttagattttgtcaataagtatatctaggactgaatgtgttatattccatagatgaagttgagagaaagtta |
407 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37201305 |
attagtacacattgttgcttattctgattttagattttgtcaataagtatatctaggactgaatgtgttatattccatagatgaagttgagagaaagtta |
37201404 |
T |
|
| Q |
408 |
gaaaacttttgttttgatggtaatgaatgagtaatattgcaaatgagaaaattgacctttttatgaggtgattacatctatatataggcaccaccactaa |
507 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37201405 |
gaaaacttttgtattgatggtaatg----agtaatattgcaaatgagaaaattgacctttttatgaggtgattacatctatatataggcaccaccactaa |
37201500 |
T |
|
| Q |
508 |
gtaccaaaaactactatctttaatagtagcaaagcggacggagtgagtaaagcaagagcccctgccctttgggcttggtccatttgttagttgtgataca |
607 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37201501 |
gtaccaaaaactactatctctaatagtagcaaagcggacggagtgagtaaagcaagagcccctgccctttgggcttggtccatttgttagttgtgataca |
37201600 |
T |
|
| Q |
608 |
actaggagggggtagagggtgcggggggcgacagattaaggtaaacctgtaatcttgactacaataattaaacaaagttttgtactatgtaatcgtaacc |
707 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37201601 |
actaggaggggatagagggtgcggggggcgacagattaaggtagacctgtaatcttgactacaataattaaacaaagttttgtactatgtaatcgtaacc |
37201700 |
T |
|
| Q |
708 |
attgcataatagaaaactacagtagacaacagtcactctgcgactgcagtccaaggtgtagaacatgctaggatagttagagttttgttattgttagtca |
807 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
37201701 |
attgcataatagaaaactacaatagacaacagtcactctgcgactgcagtccaaggtgtagcacatgctaggatagttagagttttgttattgttagtca |
37201800 |
T |
|
| Q |
808 |
atttggaattagttaggagttagttactcaattagttgtgcagctgggttctattaataacactaacactattgtgtacataattc-atatcttttatca |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
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|
| T |
37201801 |
atttggaattagttaggagttagttactcaattagttgtgcagctgggttctattaataacactaacattattgtgtacaaaattcaatatcttttatca |
37201900 |
T |
|
| Q |
907 |
atctataatatatgattccttaatgagcttttatctcaatgtgtattcctatgctctctttctcytcctatgagtat |
983 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
37201901 |
atctataatatatgattccttaatgagcttttatctcaatgtgtattcctatgctctctttctc-tcctgtgagtat |
37201976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 37221520 - 37221715
Alignment:
| Q |
8 |
actgttaattgttcttgtgggaatagagaggtttctatggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgcaa |
107 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
37221520 |
actgttaactgttcctgtgggagcagagaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctatttcta |
37221619 |
T |
|
| Q |
108 |
aagataccaagattgaggctgagttgttacagaggtacaaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaaggtt |
203 |
Q |
| |
|
| ||||||| |||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
37221620 |
aggataccatgattgaggctgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggtt |
37221715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 37226993 - 37227189
Alignment:
| Q |
8 |
actgttaattgttcttgtgggaatagagaggtttctatggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgcaa |
107 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| | ||||||||||||||||| ||||| |||||||| || | ||||||||||| || ||||| | |
|
|
| T |
37226993 |
actgttaattgttcctgtgggaacggagaggtttcaaaagattatggtttgttcattacatatcctcttagacctgacgacactttggaatccattgcta |
37227092 |
T |
|
| Q |
108 |
aagataccaagattgaggctgagttgttacagaggtacaaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaaggtta |
204 |
Q |
| |
|
| |||||||| || ||| ||||||| | |||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||| |
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|
| T |
37227093 |
agtataccaaggttaagggtgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaaggggtcttgtttatattccagggaaaggtta |
37227189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 37386930 - 37386765
Alignment:
| Q |
37 |
ggtttctatggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgcaaaagataccaagattgaggctgagttgtta |
136 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| || |||| || || || |||||||| || |
|
|
| T |
37386930 |
ggtttccaaggattatggtttgttcataacatatcctcttagttctgaggacactttggagtccattgcgaagcatacaaaagttaagcctgagttgcta |
37386831 |
T |
|
| Q |
137 |
cagaggtacaaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaaggt |
202 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
37386830 |
cagaagtacaaccctggtgtgaatttcagcaaaggaagtgggctggtttttattccagggaaaggt |
37386765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 37440564 - 37440762
Alignment:
| Q |
8 |
actgttaattgttcttgtgggaatagagaggtttctatggattatggtttgttcatcacataccctcttagttctaaggacactt----tggagtctatt |
103 |
Q |
| |
|
|||||||| ||||| ||||| | ||| |||||| | |||||||||||||||| | ||||| |||||||||||| ||||||||| ||||||| ||| |
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|
| T |
37440564 |
actgttaactgttcctgtggagaaagactggtttccaaggattatggtttgttcgtaacatatcctcttagttctgaggacacttagtttggagtccatt |
37440663 |
T |
|
| Q |
104 |
gcaaaagataccaagattgaggctgagttgttacagaggtacaaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaaggt |
202 |
Q |
| |
|
||||| ||||||||||| || ||||||||| | |||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37440664 |
gcaaaggataccaagatggatgctgagttgctgcagaggtacaacccaggtgtgaatttcagccaaggaagtggtctggtttttattccagggaaaggt |
37440762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 37207551 - 37207617
Alignment:
| Q |
12 |
ttaattgttcttgtgggaatagagaggtttctatggattatggtttgttcatcacataccctcttag |
78 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||| | |||||||||||||||||||||||| || ||||| |
|
|
| T |
37207551 |
ttaactgttcctgtgggaacagagaggtttccaaggattatggtttgttcatcacatatccacttag |
37207617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 37215701 - 37215748
Alignment:
| Q |
158 |
aatttcagcaaaggaagtggtcttgtttttattccagggaaaggttag |
205 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
37215701 |
aatttcagccaaggaagtggtcttgtttatattcgagggaaaggttag |
37215748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 37196044 - 37196114
Alignment:
| Q |
8 |
actgttaattgttcttgtgggaatagagaggtttctatggattatggtttgttcatcacataccctcttag |
78 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||| | ||||||||||||||| || ||||| |||||||| |
|
|
| T |
37196044 |
actgttaattgttcatgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttag |
37196114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 799 - 835
Target Start/End: Original strand, 5209109 - 5209145
Alignment:
| Q |
799 |
tgttagtcaatttggaattagttaggagttagttact |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5209109 |
tgttagtcaatttggaattagttaggagttaattact |
5209145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 48090478 - 48090533
Alignment:
| Q |
470 |
atgaggtgattacatctatatataggcaccaccactaagtaccaaaaactactatcttt |
528 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
48090478 |
atgaggtgattacatctatatatagg---caccactaagtaccagttactactatcttt |
48090533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 568 - 614
Target Start/End: Original strand, 2743485 - 2743531
Alignment:
| Q |
568 |
cctgccctttgggcttggtccatttgttagttgtgatacaactagga |
614 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||| | ||||||||||| |
|
|
| T |
2743485 |
cctgccctttgggcttggcccatttgtttgttgggttacaactagga |
2743531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 728
Target Start/End: Complemental strand, 15846753 - 15846712
Alignment:
| Q |
687 |
ttgtactatgtaatcgtaaccattgcataatagaaaactaca |
728 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
15846753 |
ttgtactatgtaatcttaagcattgcataatagaaaattaca |
15846712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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