View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683-Insertion-2 (Length: 654)
Name: NF2683-Insertion-2
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Original strand, 43716006 - 43716544
Alignment:
| Q |
8 |
caacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcctcctccatatttttatc |
107 |
Q |
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| T |
43716006 |
caacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcaatatcactgtcctcctcctccatatttttatc |
43716105 |
T |
|
| Q |
108 |
tgccgtaatcagagacaacaagaagaagaagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccactcctgcaggtggtggctc |
207 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716106 |
tgccatagtcagagacaacaagaagaagaagctagaaaaaataataacaaattaacaatcatttacaatcaccagatcccactcctgcaggtggtggctc |
43716205 |
T |
|
| Q |
208 |
aattaatgataattattcaaagatcacatcacatacagaggaaatcatattccacaaactctgttgataccctttgaaatataataattgtccaaagaaa |
307 |
Q |
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| T |
43716206 |
aattaatgataataattcaaag-----atcacatacagaggaaatcatattccacaaactctgttgataccctttgaaatataataattgtccaaagaaa |
43716300 |
T |
|
| Q |
308 |
ccagaatatctgcagaataaactaatcgagtaaacatgtagaaaatatataaagacttatattaacttagatgtcagagcaaccaggaaaatatttgaaa |
407 |
Q |
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| T |
43716301 |
ccagaatatctgcagaataaactaatcgagtaaacatgtagaaaatatataaagacttatattaacttagatgtcagagcaaccaggaaaatatttgaaa |
43716400 |
T |
|
| Q |
408 |
gatattccatgtttttgaataaagacttatcttcaggtttactgggagacactgattcatctctagc-tttctatgttattaacatataaaaagaagttg |
506 |
Q |
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| T |
43716401 |
gatattccatgtttttgaat--agacttatcttcaggtttactgggagacactgattcatctctagcttttctatgttattaacatataaaaagaagttg |
43716498 |
T |
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| Q |
507 |
aaaagtaatgaacttttgtaaggcgaagaagataagttgagatgaa |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716499 |
aaaagtaatgaacttttgtaaggcgaagaagataagttgagatgaa |
43716544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 589 - 654
Target Start/End: Original strand, 43716542 - 43716607
Alignment:
| Q |
589 |
gaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtga |
654 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716542 |
gaaatcaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtga |
43716607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 576 - 651
Target Start/End: Complemental strand, 6814847 - 6814772
Alignment:
| Q |
576 |
ccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccag |
651 |
Q |
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| T |
6814847 |
ccatacttggaaaaaaatcgattgcccaatctgccaatgcttccatcatcactggccaaagactccacatatccag |
6814772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 6816720 - 6816638
Alignment:
| Q |
8 |
caacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcc |
90 |
Q |
| |
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|||||||||| ||||| ||||||| || || ||||||||| |||||| ||||||||||||||| | |||||| | |||||| |
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| T |
6816720 |
caacccagtgatccacttgtcctctacaattctggaagacaacttcaataagctttggagctggcacaatatcattatcctcc |
6816638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 3e-53; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 52891623 - 52891346
Alignment:
| Q |
8 |
caacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcctcctccatatttttatc |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
52891623 |
caacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcaatatcactgtc------ctccatatttttatc |
52891530 |
T |
|
| Q |
108 |
tgccgtaatc---------agagaca--------acaagaagaagaagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccact |
190 |
Q |
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|||| ||||| | | ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
52891529 |
tgccataatctgcaatgtgaaatacaaatcagagacaacaagaagaagctagaaaaaataat---aagttaacaatcatttacaatcaccagatcccatt |
52891433 |
T |
|
| Q |
191 |
cc------tgcaggtggtggctcaattaatgataattattcaaagatcacatcacatacagaggaaatcatattccacaaactctgttgata |
276 |
Q |
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| T |
52891432 |
ccagtcctagcaggtggtggccaaattaatgataataattcaaag-----atcacttacagaggaaatcatattccacaaactctgttgata |
52891346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 460 - 654
Target Start/End: Complemental strand, 52887439 - 52887249
Alignment:
| Q |
460 |
tgattcatctctagctttctatgttattaacatataaaaa-gaagttgaaaagtaatgaacttttgtaaggcgaagaagataagttgagatgaattgtag |
558 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||||| ||||| ||| ||| |||||||||| ||||| |||| ||||||||||| ||||| | |
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| T |
52887439 |
tgattcatctctagctgtctaagttattaacaagtaaaaaagaagtccaaa-gtactgaacttttggaaggcaaaga---taagttgagat-aattgcaa |
52887345 |
T |
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| Q |
559 |
tcagatgtatttgagagccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtga |
654 |
Q |
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||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
52887344 |
tcaaatgtagttgagagccatacttgaaaagaaatcaatagcccaatctgatagtgcttccatcatcaatggccaaaggttccacatgtccagtga |
52887249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 52891029 - 52890957
Alignment:
| Q |
356 |
ataaagacttatattaacttagatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaata |
428 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52891029 |
ataaagacttatattaacttaaatgtcagagcaaccaggaaaatatttgacagatattccatgtttttgaata |
52890957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 52891300 - 52891238
Alignment:
| Q |
291 |
ataattgtccaaagaaaccagaatatctgcagaataaactaatcgagtaaacatgtagaaaat |
353 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
52891300 |
ataattgtccaaaggaaccataatatctgcagaataaactaatcaagtaaatatgtagaaaat |
52891238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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