View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683-Insertion-5 (Length: 446)

Name: NF2683-Insertion-5
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683-Insertion-5
NF2683-Insertion-5
[»] chr7 (2 HSPs)
chr7 (8-446)||(7161488-7161924)
chr7 (66-436)||(3916869-3917237)
[»] chr8 (8 HSPs)
chr8 (71-436)||(3171534-3171897)
chr8 (71-217)||(3139901-3140047)
chr8 (73-297)||(3168048-3168274)
chr8 (71-180)||(2982523-2982632)
chr8 (79-180)||(2707759-2707860)
chr8 (325-376)||(3280478-3280529)
chr8 (72-173)||(2909011-2909112)
chr8 (76-128)||(3004665-3004717)
[»] scaffold0065 (2 HSPs)
scaffold0065 (320-440)||(47549-47669)
scaffold0065 (76-211)||(47773-47908)
[»] chr1 (1 HSPs)
chr1 (73-196)||(10753402-10753525)


Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Complemental strand, 7161924 - 7161488
Alignment:
Q  8 caaataacattagcaatgattttaagaggatattggtacctcttttaaagaaatgcatatctctttaagattatgattgggatgtgagcaattttaggcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7161924 caaataacattagcaatgattttaagaggatattggtacctcttttaaagaaatgcatatctctttaagattatgattgggatgtgagcaattttaggcc 7161825  T
Q  108 atgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggctagacgagacattcttttgggcag 207  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7161824 atgttgcacttgtttgtgtctcacattcttcaagtaagagggggcactcggtgatttctagggtctgtaagttggccagacgagacattcttttgggcag 7161725  T
Q  208 cgaatccaaattttg--agtctttaatggtgatatgtagaagtgacgagaggttgcaaatccactccggcaatgactttagatcggaacaatatgaaact 305  Q
     ||| ||||||||||  |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7161724 tgaagccaaattttgacagtctttaatggtgatatgctgaagtgacgagaggttgcaaatccaatccggcaatgactttagatcggaacaatatgaaact 7161625  T
Q  306 tcgatcaatattttgcaaggaaggaagatagttgaggtcgtccttaaaccaaatttcaatttcctgaaatgttcgacttggaagcttcataaaaacaaga 405  Q
        ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7161624 ----tcaatattttgcaaggatggaagatagtttaggtcgtccttaaaccaaatttcaatttcctgaaatgttcgacttggaagcttcataaaaacaaga 7161529  T
Q  406 tgctcgagagaagtcagattttgcacccaatccttcgggta 446  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  7161528 tgctcgagggaagtcagattttgcacccaatccttcaggta 7161488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 66 - 436
Target Start/End: Original strand, 3916869 - 3917237
Alignment:
Q  66 atctctttaagattatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttc 165  Q
    ||||||||||||||||| |||||||||||| ||||||  |||||||||| ||||||||||||||| ||||||||| ||||||||| ||   | |||||||    
T  3916869 atctctttaagattatgtttgggatgtgagaaattttgtgccatgttgcacttgtttgtgtctcacattcttcaattaagaggggacatcgaatgatttc 3916968  T
Q  166 tagggtctgtaagttggctagacgagacattcttttgggcagcgaatccaaattt-tg-agtctttaatggtgatatgtagaagtgacgagaggttgcaa 263  Q
    |||||||||||| ||||| ||||| | ||||| || ||||||||||||||||||| || |||||  |||||| |||||  ||||||| |||| |||| ||    
T  3916969 tagggtctgtaatttggcaagacgtggcattccttcgggcagcgaatccaaatttatgcagtctgcaatggttatatgctgaagtgaggagatgttgaaa 3917068  T
Q  264 atccactccggcaatgactttagatcggaacaatatgaaacttcgatcaatattttgcaaggaaggaagatagttgaggtcgtccttaaaccaaatttca 363  Q
    ||||| || ||||||| | ||||||| |||||||   ||| |    | ||| ||||||| ||||||||||||| |||  || ||||||||||||||| ||    
T  3917069 atccaatcaggcaatgccattagatctgaacaatgccaaaat----ttaattttttgcagggaaggaagatagctgatctcttccttaaaccaaattcca 3917164  T
Q  364 atttcctgaaatgttcgacttggaagcttcataaaaacaagatgctcgagagaagtcagattttgcacccaat 436  Q
    ||||||||||||||  || |||||||||||||||||  ||||||||| |||||||  |||||| |||||||||    
T  3917165 atttcctgaaatgtctgatttggaagcttcataaaactaagatgctcaagagaagatagatttcgcacccaat 3917237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 71 - 436
Target Start/End: Original strand, 3171534 - 3171897
Alignment:
Q  71 tttaagattatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctaggg 170  Q
    |||||||||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||| || || |||||| ||| ||||||||    
T  3171534 tttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctaggg 3171633  T
Q  171 tctgtaagttggctagacgagacattcttttgggcagcgaatccaaatttt--gagtctttaatggtgatatgtagaagtgacgagaggttgcaaatcca 268  Q
    ||||||| ||||| ||| | | |||||||  |||||||||| |||||||||   |||  |  |||||||||||  |||||||||||||||||||||||||    
T  3171634 tctgtaatttggcaagatggggcattcttccgggcagcgaagccaaattttcacagtactcgatggtgatatgctgaagtgacgagaggttgcaaatcca 3171733  T
Q  269 ctccggcaatgactttagatcggaacaatatgaaacttcgatcaatattttgcaaggaaggaagatagttgaggtcgtccttaaaccaaatttcaatttc 368  Q
     || ||||||| ||||||||  |||||||   ||| |    | ||||||| |||||||||||||||||||||| ||||||| |||  ||||||  |||||    
T  3171734 gtctggcaatgcctttagatacgaacaattgcaaaat----ttaatatttcgcaaggaaggaagatagttgagatcgtcctgaaatgaaatttggatttc 3171829  T
Q  369 ctgaaatgttcgacttggaagcttcataaaaacaagatgctcgagagaagtcagattttgcacccaat 436  Q
    |||||||||| |||||||||| |    |||||| |||||||  ||||||||||||||||||| |||||    
T  3171830 ctgaaatgtttgacttggaagatgaccaaaaactagatgcttcagagaagtcagattttgcatccaat 3171897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 3139901 - 3140047
Alignment:
Q  71 tttaagattatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctaggg 170  Q
    |||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||| ||||||||| |||    || |||||||  |||| |||||    
T  3139901 tttaagattatgtttgggatgtgagcaatttttgcccatgttgcacttgtttgtgtctcacattcttcaattaaatcaggacaatcagcaatttgtaggg 3140000  T
Q  171 tctgtaagttggctagacgagacattcttttgggcagcgaatccaaa 217  Q
    ||||||| ||||| || |||| ||||| || |||||||||| |||||    
T  3140001 tctgtaatttggcaaggcgaggcattccttcgggcagcgaagccaaa 3140047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 297
Target Start/End: Original strand, 3168048 - 3168274
Alignment:
Q  73 taagattatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtc 172  Q
    |||||||||| |||||||||||| |||||| | ||||||||| |||||||||||| || ||||||||| ||||||||| ||  ||  |||||| |||||     
T  3168048 taagattatgtttgggatgtgagaaattttggaccatgttgcacttgtttgtgtcacacattcttcaactaagaggggacatccaaagatttccagggta 3168147  T
Q  173 tgtaagttggctagacgagacattcttttgggcagcgaatccaaattttga-gtct-ttaatggtgatatgtagaagtgacgagaggttgcaaatccact 270  Q
    ||||| ||||  ||||| | ||||| || |||||||||| |||||||  ||  ||| | |||| |||||||  ||||||| ||||| ||||||||||| |    
T  3168148 tgtaatttggaaagacggggcattccttcgggcagcgaagccaaattacgacatctctgaatgctgatatgctgaagtgaggagagattgcaaatccaat 3168247  T
Q  271 ccggcaatgactttagatcggaacaat 297  Q
    | ||||||  ||||||||| |||||||    
T  3168248 ctggcaatacctttagatctgaacaat 3168274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 2982632 - 2982523
Alignment:
Q  71 tttaagattatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctaggg 170  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||| ||||||| ||||||| ||| || |  |||||  || || ||| ||||||||| ||    
T  2982632 tttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctcacattgttgagctaagaatggacattcaatgatttctaagg 2982533  T
Q  171 tctgtaagtt 180  Q
    | ||||||||    
T  2982532 tatgtaagtt 2982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 2707759 - 2707860
Alignment:
Q  79 tatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaag 178  Q
    |||| ||||||||||| ||||||||| ||| ||||| ||||||| ||||| | |||| |||| |||||| || |||  | ||||||||| ||| ||||||    
T  2707759 tatgtttgggatgtgatcaattttagaccaagttgcacttgtttttgtctgacattcctcaattaagagtggacaactattgatttctaaggtatgtaag 2707858  T
Q  179 tt 180  Q
    ||    
T  2707859 tt 2707860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 3280478 - 3280529
Alignment:
Q  325 gaaggaagatagttgaggtcgtccttaaaccaaatttcaatttcctgaaatg 376  Q
    ||||||||| | || ||||| |||||||||||| ||||||||||||||||||    
T  3280478 gaaggaagacacttcaggtcatccttaaaccaagtttcaatttcctgaaatg 3280529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 2909011 - 2909112
Alignment:
Q  72 ttaagattatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggt 171  Q
    ||||||||||| ||||||||||||||| ||| ||||| || ||  ||||||| | |||| | |||| || ||| ||||| ||  || |||||||||||||    
T  2909011 ttaagattatgtttgggatgtgagcaactttgggccaagtagcatttgtttgcgcctcacactctttaactaacaggggacatccaatgatttctagggt 2909110  T
Q  172 ct 173  Q
    ||    
T  2909111 ct 2909112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 3004717 - 3004665
Alignment:
Q  76 gattatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtct 128  Q
    ||||||| ||||||||||||||||||||| |||  |||| ||||||| |||||    
T  3004717 gattatgtttgggatgtgagcaattttagaccaaattgcacttgtttctgtct 3004665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 440
Target Start/End: Complemental strand, 47669 - 47549
Alignment:
Q  320 gcaaggaaggaagatagttgaggtcgtccttaaaccaaatttcaatttcctgaaatgttcgacttggaagcttcataaaaacaagatgctcgagagaagt 419  Q
    |||||||||| ||||||||| |||| |||  ||||||| |||||||||||||||||| | || ||||||||      ||| ||| ||| || ||||||||    
T  47669 gcaaggaagggagatagttggggtcttccacaaaccaattttcaatttcctgaaatgattgatttggaagcgagtacaaaccaatatgatcaagagaagt 47570  T
Q  420 cagattttgcacccaatcctt 440  Q
    || ||||||||||||||||||    
T  47569 caaattttgcacccaatcctt 47549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 47908 - 47773
Alignment:
Q  76 gattatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgt 175  Q
    ||||||| |||| ||||||| |||||| ||| ||||||| ||||||||||||||| | ||| ||| ||||| | | || | | |||||||||||||||||    
T  47908 gattatgtttggaatgtgagaaattttgggcaatgttgcacttgtttgtgtctcacactctgcaaataagaagcgacatttaatgatttctagggtctgt 47809  T
Q  176 aagttggctagacgagacattcttttgggcagcgaa 211  Q
    || ||||  || | || ||||| || ||||||||||    
T  47808 aatttggaaaggcaaggcattccttcgggcagcgaa 47773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 10753402 - 10753525
Alignment:
Q  73 taagattatgattgggatgtgagcaattttaggccatgttgcgcttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtc 172  Q
    ||||| |||| ||||||||||||| ||||||||||  ||||| ||||||| | ||  | |||| |||| |||||| || || ||| ||||||||| |||     
T  10753402 taagactatgtttgggatgtgagcgattttaggcccggttgcacttgtttctctcaaacattcctcaattaagagtggacattcaatgatttctaaggtt 10753501  T
Q  173 tgtaagttggctagacgagacatt 196  Q
    | ||||||||  ||||||| ||||    
T  10753502 tttaagttggtaagacgaggcatt 10753525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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