View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683-Insertion-6 (Length: 400)
Name: NF2683-Insertion-6
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683-Insertion-6 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 6151976 - 6151584
Alignment:
| Q |
8 |
ctacttctctttaaccgtgagctagcacgaaacaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattca |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151976 |
ctacttctctttaaccgtgaactagcacgaaacaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattca |
6151877 |
T |
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| Q |
108 |
cattactactgtttcctgcaacaactccacttctttgaaaatcagatcctgcagcaggttcagtaggtctagctccagtttgtcctccaataaccgggat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151876 |
cattactactgtttcctgcaacaactccacttctttgaaaatcagatcctgcaacaggttcagtaggtctagctccagtttgtcctccaataaccgggat |
6151777 |
T |
|
| Q |
208 |
ggacgatacacttctgggtcctccattgataatgctaatatttctcccaaaaagtcttagatatactgcatcacgatgtgggttagtttcttcactatgt |
307 |
Q |
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| T |
6151776 |
gaacaatacaattctgggtcctccattgataatgctaatatttgtcccaaaaagtcttagatatactgcatcacgatgtgggttagtttcttcactatgt |
6151677 |
T |
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| Q |
308 |
tggtttcctaaacggtattggttggccatattttatagcttcttacctgcattcacactataacaacaaccatatatcatagagctctcacag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151676 |
tggtttcctaaacggtattggttggccatattttatagcttcttacctgcattcacactataacaacaaccatatatcatagagctctcacag |
6151584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 386
Target Start/End: Complemental strand, 6145534 - 6145178
Alignment:
| Q |
30 |
tagcacgaaacaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaac |
129 |
Q |
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|||||||||||||||||||||| ||||||||| ||| ||||| |||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
6145534 |
tagcacgaaacaactcatcattcctagtaccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattactattgtttcctgcaac |
6145435 |
T |
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| Q |
130 |
aactccacttctttgaaaatcagatcctgcagcaggttcagtaggtctagctccagtttgtcctccaataaccgggatggacgatacacttctgggtcct |
229 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| | |||||| | |||| |
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| T |
6145434 |
aactccacttcttggataatcagatcttgcagcaggttcagtaggtccagctccagtttgtcctccaatagtcggggtggacgacagacttcttgatcct |
6145335 |
T |
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| Q |
230 |
ccattgataatgctaatatttctcccaaaaagtcttagatatactgcatcacgatgtgggttagtttcttcactatgttggtttcctaaacggtattggt |
329 |
Q |
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||||||||||||| ||||||| ||||||||||| |||||| |||||| ||||| |||| || |||||||| || |||||||||| ||| ||||||||| |
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| T |
6145334 |
ccattgataatgcgaatatttgatccaaaaagtctaagatatgctgcattacgatatgggctactttcttcattacgttggtttccaaaatggtattggt |
6145235 |
T |
|
| Q |
330 |
tggccatattttatagcttcttacctgcattcacactataacaacaaccatatatca |
386 |
Q |
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|||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
6145234 |
tggccatattttatagcttcttacctgcatgcacgccataacaacaaccatatatca |
6145178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 386
Target Start/End: Complemental strand, 6126133 - 6125739
Alignment:
| Q |
12 |
ttctctttaaccgtgagctagcacgaaacaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacatt |
111 |
Q |
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||||||||||| ||| |||||||||||||||||||||| ||||||||| ||| | ||| ||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
6126133 |
ttctctttaacaatgaattagcacgaaacaactcatcattcctagtaccaatagtaatggtgttaatttcatcgttgaatgacgaaatggaattcacatt |
6126034 |
T |
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| Q |
112 |
actactgtttcctgcaacaactccacttctttgaaaatcagatcctgcagcaggttcagtaggtctagctccagtttgtcctccaataaccgggatggac |
211 |
Q |
| |
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|||| | |||||| |||||| | ||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||| |||||| ||| | |||||||| |
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| T |
6126033 |
actattatttcctccaacaaatgcacttctttgataattagatcctccagcaggttcagtaagtctagctccagtttatcctccgatagtcaggatggac |
6125934 |
T |
|
| Q |
212 |
gatacac---------------ttctgggtcctccattgataatgctaatatttctcccaaaaagtcttagatatactgcatcacgatgtggg-----tt |
291 |
Q |
| |
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| |||| |||| | |||| |||||||||||| |||||| ||||||||||||||||||||||||| || || |||| || |
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| T |
6125933 |
ggcacacttctcgatccttcatttctcgatccttcattgataatgcaaatattcgatccaaaaagtcttagatatactgcattacaatatgggcttcttt |
6125834 |
T |
|
| Q |
292 |
agtttcttcactatgttggtttcctaaacggtattggttggccatattttatagcttcttacctgcattcacactataacaacaaccatatatca |
386 |
Q |
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| T |
6125833 |
aatttcttcattatgctggtttcctaaacggtattggttggccatattttatagcttctttcctacatgcactccataacaacaaccatatatca |
6125739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 28755444 - 28755297
Alignment:
| Q |
239 |
atgctaatatttctcccaaaaagtcttagatatactgcatcacgatgtgggttagtttcttcactatgttggtttcctaaacggtattggttggccatat |
338 |
Q |
| |
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|||||||||||| |||||||||| ||| ||||| ||||||| ||| || | | |||||||| | || ||||||||||||| ||||||||||||||| |
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| T |
28755444 |
atgctaatatttgacccaaaaagtattaaatatattgcatcatgatatgagatcctttcttcattctgacggtttcctaaacgatattggttggccatag |
28755345 |
T |
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| Q |
339 |
tttatagcttcttacctgcattcacactataacaacaaccatatatca |
386 |
Q |
| |
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|| ||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
28755344 |
attgtagcttcttacctgcatgcactacataacaacaaccatatatca |
28755297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 33802989 - 33803100
Alignment:
| Q |
39 |
acaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccact |
138 |
Q |
| |
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||||||||||||| |||| |||||||| ||||| ||||||| ||||| ||||||| |||| |||||| |||||||||| |||||| ||||| ||||||| |
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| T |
33802989 |
acaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaacatctccact |
33803088 |
T |
|
| Q |
139 |
tctttgaaaatc |
150 |
Q |
| |
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||||||| |||| |
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| T |
33803089 |
tctttgataatc |
33803100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 33731610 - 33731721
Alignment:
| Q |
39 |
acaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccact |
138 |
Q |
| |
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||||||||||||| |||| |||||||| ||||| ||||||| ||||| ||||||| |||| ||||| |||||||||| |||||| ||||| ||||||| |
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| T |
33731610 |
acaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacagaattagcattactactatttcctacaacatctccact |
33731709 |
T |
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| Q |
139 |
tctttgaaaatc |
150 |
Q |
| |
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||||||| |||| |
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| T |
33731710 |
tctttgataatc |
33731721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 33731931 - 33732023
Alignment:
| Q |
294 |
tttcttcactatgttggtttcctaaacggtattggttggccatattttatagcttcttacctgcattcacactataacaacaaccatatatca |
386 |
Q |
| |
|
|||||||| |||| | ||||||||||| ||||||||||||||| || | |||||||||||||| ||||| |||||| ||||||||||||| |
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| T |
33731931 |
tttcttcattatgacgatttcctaaacgatattggttggccatagattgcaacttcttacctgcatgcacaccataacagcaaccatatatca |
33732023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 33803327 - 33803402
Alignment:
| Q |
311 |
tttcctaaacggtattggttggccatattttatagcttcttacctgcattcacactataacaacaaccatatatca |
386 |
Q |
| |
|
||||||||||| ||||||||||||||| || | |||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
33803327 |
tttcctaaacgatattggttggccatagattgcaacttcttgcctgcatgcacaccataacaacaaccatatatca |
33803402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 6138412 - 6138334
Alignment:
| Q |
88 |
gaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatcagatcctgcagcaggt |
166 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||||| | |||||||||||| | ||| ||||| |||||||| |
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| T |
6138412 |
gaatgatgaaatggaattagcattactactatttcctgcaggaggtccacttctttggtagtcatatcctacagcaggt |
6138334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 28755712 - 28755803
Alignment:
| Q |
240 |
tgctaatatttctcccaaaaagtcttagatatactgcatcacgatgtgggttagtttcttcactatgttggtttcctaaacggtattggttggc |
333 |
Q |
| |
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||||||||||| |||||||| |||| ||||| |||||||| || | || | |||||||| | || |||||||||||||||||||||||||| |
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| T |
28755712 |
tgctaatatttgacccaaaaa--cttaaatatattgcatcacaatataggctcctttcttcattctgatggtttcctaaacggtattggttggc |
28755803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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