View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683-Insertion-7 (Length: 370)
Name: NF2683-Insertion-7
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold1052 (1 HSPs) |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 6182465 - 6182820
Alignment:
| Q |
17 |
ttgagttttaattaattcaatttggactttcaacaggtgaca-aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182465 |
ttgagttttaattaattcaatttgaactttcaacaggtgacagaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
6182564 |
T |
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| Q |
116 |
gtaaagtggaaaaggaatatttgttttaaaacttgtttt-ttggtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacg |
214 |
Q |
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||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182565 |
gtagagtgaaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatggattcgaaacagcgttgtacccatgtccatgtcaccacg |
6182664 |
T |
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| Q |
215 |
acaacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcatttctcttgca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6182665 |
acaacctcacaacggtgaaatcctcttcgactatgtcatcgctcttgtcttcatcctcgtcactccagtgttccgtttgcttctcttcatttctcttgca |
6182764 |
T |
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| Q |
315 |
ccattcttcttattcctctttgtgaattcaatatgttctttgttcaaagttcttga |
370 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
6182765 |
ccattcttcttattcctcattgtgaattcaatatgttctttgttcaaggttcttga |
6182820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 5101200 - 5101553
Alignment:
| Q |
17 |
ttgagttttaattaattcaatttggactttcaacaggtgaca-aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5101200 |
ttgagttttaattaattcaatttggactttcaacaggtgacagaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
5101299 |
T |
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| Q |
116 |
gtaaagtggaaaaggaatatttgttttaaaacttgtttt-ttggtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacg |
214 |
Q |
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|||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
5101300 |
gtaaagtggaaaaggaatgt--gttttaaaacttgtttttttggtttgatgttggaatctggattcggaacagcattgtacccatgtccatgtcaccacg |
5101397 |
T |
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| Q |
215 |
acaacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcatttctcttgca |
314 |
Q |
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| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5101398 |
ataacctcacaacggtgaaatcctctttgactatgtcatcgttctcgtcttcatcctcgtcactccagtgttccgtttgcttctcttcatttctcttgca |
5101497 |
T |
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| Q |
315 |
ccattcttcttattcctctttgtgaattcaatatgttctttgttcaaagttcttga |
370 |
Q |
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| T |
5101498 |
ccattcttcttattcttctttgtgaactcaatatgttctttgttcaaggttcttga |
5101553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 32356241 - 32356594
Alignment:
| Q |
20 |
agttttaattaattcaatttggactttcaacaggtgaca-aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggta |
118 |
Q |
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||||||||||||||||||||| ||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32356241 |
agttttaattaattcaatttgaacttttaacgggtgacagaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggta |
32356340 |
T |
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| Q |
119 |
aagtggaaaaggaatatttgttttaaaacttgttttttg--gtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacgac |
216 |
Q |
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|||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32356341 |
gagtgaaaaaggaatatgtgttttaaaacttgtttttttttgtttgattttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacgac |
32356440 |
T |
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| Q |
217 |
aacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcatttctcttgcacc |
316 |
Q |
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| T |
32356441 |
aacctcacaacggtgaaatcctcttcgactatgtcttcgctcttgtcttcatcctcgtcactccagtgttctgtttgcttctcttcatttctcttgcacc |
32356540 |
T |
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| Q |
317 |
attcttcttattcctctttgtgaattcaatatgttctttgttcaaagttcttga |
370 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
32356541 |
attcttcttattcctcattgtgaattcaatatgttctttgttcaaggttcttga |
32356594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1052 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold1052
Description:
Target: scaffold1052; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 706 - 1048
Alignment:
| Q |
17 |
ttgagttttaattaattcaatttggactttcaacaggtgacaa----aactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttg |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
706 |
ttgagatttaattaattcaatttggactttcaacaggtgacaacagaaactatgataaaatcaagaaataggacacacaaattcattgttgttgttgtta |
805 |
T |
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| Q |
113 |
aaggtaaagtggaaaaggaatatttgttttaaaacttgtttt-ttggtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcacc |
211 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
806 |
gaggtaaagtggaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatggattcgaaacagcgttgtacccatgtccatgtcacc |
905 |
T |
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| Q |
212 |
acgacaacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcatttctctt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
906 |
acgacaacctcacaacggtgaaatcctcttcgactatgccatcgctctcgtcttcatcctcgtcactccagtgttccgtttgcttctcttcatttctctt |
1005 |
T |
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| Q |
312 |
gcaccattcttcttattcctctttgtgaattcaatatgttctt |
354 |
Q |
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| T |
1006 |
gcacctatcttcttattcctctttgtgaactcaatatgttctt |
1048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 20574 - 20646
Alignment:
| Q |
59 |
aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaagga |
131 |
Q |
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|||||||| |||||| |||||||||||||||||| | ||||||||||||||||| | ||||| |||||||||| |
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| T |
20574 |
aaactatgataaaattaacaaataggacacacaattccattgttgttgttgttggaagtaaaatggaaaagga |
20646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 10200348 - 10200279
Alignment:
| Q |
59 |
aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaa |
128 |
Q |
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|||||||| |||||| |||||||||||||||||| | ||||| ||||||||||| | ||||| ||||||| |
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| T |
10200348 |
aaactatgataaaattaacaaataggacacacaattccattgctgttgttgttggaagtaaaatggaaaa |
10200279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 325876 - 325832
Alignment:
| Q |
59 |
aaactatggtaaaatcaacaaataggacacacaaattcattgttg |
103 |
Q |
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|||||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
325876 |
aaactatgataaaattaacaaataggacacacaatttcattgttg |
325832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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