View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683-Insertion-8 (Length: 266)
Name: NF2683-Insertion-8
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 15395672 - 15395414
Alignment:
| Q |
8 |
atgctaagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctcttaagacactgc |
107 |
Q |
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| T |
15395672 |
atgctaagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctcttaagacactgc |
15395573 |
T |
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| Q |
108 |
caccaaatctccacaaattgtaaatacctatacctccaataagaagaaaccaaagaagaacaattggagcaaagagccaaccaactctatctgtaccata |
207 |
Q |
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| T |
15395572 |
caccaaatctccacaaattgtaaatacctatacctccaataagaagaaaccaaagcagaacaattggagcaaagagccaaccaactctatctgtaccata |
15395473 |
T |
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| Q |
208 |
acgttgtatgctgaatagtccaactaatattacaacagcaatcagcacaactactcctg |
266 |
Q |
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| T |
15395472 |
acgttgtatgctgaatagtccaactaatattacaacagcaaccagcacaactactcctg |
15395414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 15387298 - 15387040
Alignment:
| Q |
8 |
atgctaagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctcttaagacactgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387298 |
atgctaagcaagattccaccaagggaaagccaactatctttgcgtccgtctcttagataccgatacacgtagagaggcgaaaaggctcttaagacactgc |
15387199 |
T |
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| Q |
108 |
caccaaatctccacaaattgtaaatacctatacctccaataagaagaaaccaaagaagaacaattggagcaaagagccaaccaactctatctgtaccata |
207 |
Q |
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| T |
15387198 |
caccaaatctccacaaattgtaaatacctatacccccaataagaagaaaccaaagcagaacaattggagcaaagagccaaccaactctatctgtaccata |
15387099 |
T |
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| Q |
208 |
acgttgtatgctgaatagtccaactaatattacaacagcaatcagcacaactactcctg |
266 |
Q |
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| T |
15387098 |
acgttgtatgctgaatagtccaactaatattacaacagcaaccagcacaactactcctg |
15387040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 38667782 - 38667900
Alignment:
| Q |
131 |
atacctatacctccaataagaagaaaccaaagaagaacaattggagcaaagagccaaccaactctatctgtaccataacgttgtatgctgaatagtccaa |
230 |
Q |
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||||| |||||||| || || ||||||||||| || |||||||||||||||||||||| |||| | ||||| |||||| |||| | |||||| | ||||| |
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| T |
38667782 |
ataccaatacctcctattaggagaaaccaaaggaggacaattggagcaaagagccaactaactttgtctgtgccataatgttgcaggctgaaaaatccaa |
38667881 |
T |
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| Q |
231 |
ctaatattacaacagcaat |
249 |
Q |
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| T |
38667882 |
ctaatattacaacagcaat |
38667900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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