View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683-Insertion-9 (Length: 154)
Name: NF2683-Insertion-9
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 2e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 2e-78
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 13148748 - 13148895
Alignment:
| Q |
7 |
agatgcttgcaatgaaaaatcattgaaactgcttataacacactgatgaatctcaaggcctaatgcttctaatgtgttcactgttgacagtaacaatcct |
106 |
Q |
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| T |
13148748 |
agatgcttgcaatgaaaaatcattgaaactgcttataacacactgatgaatctcaaggcctaatgcttctaatgtgttcactgttgacagtaacaatcct |
13148847 |
T |
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| Q |
107 |
ggctttgtggcacagcagatactgattcttgtgtcctggtctctcctc |
154 |
Q |
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| T |
13148848 |
ggctttgtggcacagcagatactgattcttgtgtcctggtctctcctc |
13148895 |
T |
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Target: chr7 (Bit Score: 137; Significance: 7e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 7e-72
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 29010169 - 29010025
Alignment:
| Q |
7 |
agatgcttgcaatgaaaaatcattgaaactgcttataacacactgatgaatctcaaggcctaatgcttctaatgtgttcactgttgacagtaacaatcct |
106 |
Q |
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| T |
29010169 |
agatgcttgcaatgaaaaatcattgaaactgcttataacacactggtgaatctcaaggcctaatgcttctaatgtgttcactgttgacagtaacaatcct |
29010070 |
T |
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| Q |
107 |
ggctttgtggcacagcagatactgattcttgtgtcctggtctctc |
151 |
Q |
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| T |
29010069 |
ggctttgtggcacagcagatactgattcttgtgtcctgctctctc |
29010025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 52002529 - 52002617
Alignment:
| Q |
23 |
aaatcattgaaactgcttataacacactgatgaatctcaaggcctaatgcttctaatgtgttcactgttgacagtaacaatcctggctt |
111 |
Q |
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| T |
52002529 |
aaatcattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggatagcaacaaccctggctt |
52002617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 25901507 - 25901598
Alignment:
| Q |
23 |
aaatcattgaaactgcttataacacactgatgaatctcaaggccta---atgcttctaatgtgttcactgttgacagtaacaatcctggctt |
111 |
Q |
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||||||||||||| ||| |||||| | || |||||||||||||||| ||||||| |||||||| ||||| || | ||||| |||||||| |
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| T |
25901507 |
aaatcattgaaacagctaataacatattgttgaatctcaaggcctaatgatgcttccaatgtgtttactgtggatatcaacaaccctggctt |
25901598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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