View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2683R-Insertion-1 (Length: 936)
Name: NF2683R-Insertion-1
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683R-Insertion-1 |
 | |
|
| [»] scaffold0428 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 848; Significance: 0; HSPs: 21)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 7 - 899
Target Start/End: Original strand, 33258004 - 33258899
Alignment:
| Q |
7 |
cagaacagacattcaacaattagaaatattttgtaagaattctgagataggtcgatggtctggaaaacgccacactttaatggtctcgcaaatgccagct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33258004 |
cagaacagacattcaacaattagaaatattttgtaagaattctgagataggtcgatggtctggaaaacgccacactttaatggtctcgcaaatgccagct |
33258103 |
T |
|
| Q |
107 |
atacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaagatttccttcgtaacaaactgaacctgtgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33258104 |
atacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaagatttccttcgtaacaaactgaacctgtgg |
33258203 |
T |
|
| Q |
207 |
accaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacacc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33258204 |
accaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacacc |
33258303 |
T |
|
| Q |
307 |
aatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33258304 |
aatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgc |
33258403 |
T |
|
| Q |
407 |
ttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggct |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33258404 |
ttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggct |
33258503 |
T |
|
| Q |
507 |
gagaccagtaccgttgatttcctgcaacccaacattgaacaatttaatatttgcatcaaagacgtccattttattctcaattttgcttgtggacaactaa |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
33258504 |
gagaccagtaccgttgatttcctgcaacccaacattgaacaatttaatatttgcatcaaagacgtccattttattctcaattttgcttgggtacaactaa |
33258603 |
T |
|
| Q |
607 |
catctacacatgtggttacattcagttgatgcattttctaaaattattaccaatgccgacatgtcagtgtcgtggaaaatggttgtgtttgtgtcggtac |
706 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33258604 |
catctgcacatgtggttacattcagttgatgcattttctaaaattattaccaatgccgacatgtcagtgtcgtggaaaatgtttgtgtttgtgtcggtac |
33258703 |
T |
|
| Q |
707 |
ttcgacagactaatgctcacatgtcatacacattcacaatttaataattcagataatgtttatcatatatataagtatggagggaaggttcgggtgaaaa |
806 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33258704 |
tttgacagactaatgctcacatgtcatacacattcacaatttaataattcagataatgtttatcatatatataagtatggagggaaggttcgggtgaaaa |
33258803 |
T |
|
| Q |
807 |
tattcaagaaaacttagcaccctgataaagcttgtagttctggtgcctttaat-aatttgaagtgaatg-aaaagaatagg-aaatgagaaatgca |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
33258804 |
tattcaagaaaacttagcaccctgataaagcttgaagttctggtgcctttaataaatttgaagtgaatgaaaaagaataggaaaatgagaaatgca |
33258899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 190 - 652
Target Start/End: Original strand, 33414561 - 33415025
Alignment:
| Q |
190 |
acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc |
289 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33414561 |
acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttc |
33414659 |
T |
|
| Q |
290 |
acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc |
389 |
Q |
| |
|
|||||||||||||||||||| ||| |||| || || |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33414660 |
acttcaattagaacaccaatacgtgcatcgtgaatg-tatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccc |
33414758 |
T |
|
| Q |
390 |
tttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctcgcagtt |
489 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
33414759 |
tttttcctgagatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgcaccagtttcttctcgtagtt |
33414858 |
T |
|
| Q |
490 |
gcttaaccaaaaaggctgagaccagtaccgttgatttcctgcaacccaacattgaacaatttaatatt-----tgcatcaaagacgtccattttattctc |
584 |
Q |
| |
|
|||| |||||| |||| ||||| | ||| | |||||||| |||| ||| |||||||||||||||||| ||| ||||| || |||||||| ||||| |
|
|
| T |
33414859 |
gcttgaccaaagaggccgagactactactttggatttcctacaacacaaaattgaacaatttaatattatatttgcgtcaaacacatccatttttttctc |
33414958 |
T |
|
| Q |
585 |
aa-ttttgcttgtggacaactaacatctacacatgtggttacattcagttgatgcattttctaaaatta |
652 |
Q |
| |
|
|| ||||| |||| ||| ||| || ||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
33414959 |
aaattttg--tgtgtacagctagcacgtacacatgttgttacattcagttgttgcattttctaaaatta |
33415025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 445 - 669
Target Start/End: Original strand, 33384180 - 33384398
Alignment:
| Q |
445 |
ctttcttacagtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggctgagaccagtaccgttgatttcctgcaacccaacattga |
544 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
33384180 |
ctttcttacagtccatcatctctgcacctgtttcttcttgcagttgcttaaccaaagaggctgagaccactaccgttgatttcctgcaaaacaacattga |
33384279 |
T |
|
| Q |
545 |
acaatttaatatttgcatcaaagacgtccattttattctcaattttgcttgtggacaactaacatctacacatgtggttacattcagttgatgcattttc |
644 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| || ||| |||| | ||||| |||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
33384280 |
gcaatttaatatttgcatcaaagacatccatttttttctaaacttttcttgagtacaac------ctacacatgtggctacgttcagttgttgcattttc |
33384373 |
T |
|
| Q |
645 |
taaaattattaccaatgccgacatg |
669 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
33384374 |
taaaattattaccaatgtcgacatg |
33384398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 327 - 578
Target Start/End: Original strand, 33293102 - 33293353
Alignment:
| Q |
327 |
tatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcac |
426 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| | |||||||||||||||| |||||||||||||||| |||| ||||||| | |||||||||||||| |
|
|
| T |
33293102 |
tatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcaccttttcaagatcac |
33293201 |
T |
|
| Q |
427 |
cttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggctgagaccagtaccgttgattt |
526 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| | ||| ||| |||| || |||| |||| ||| ||||||| |
|
|
| T |
33293202 |
cttctgtttcagcatgagctttcttacagtccatcatcccagcaccggtttcttctcttaattgtttatccaatgagtctgaaaccactactgttgattg |
33293301 |
T |
|
| Q |
527 |
cctgcaacccaacattgaacaatttaatatttgcatcaaagacgtccatttt |
578 |
Q |
| |
|
| || ||| ||||||| ||||||||| | |||||||||| || |||||||| |
|
|
| T |
33293302 |
cttgtaacacaacattaaacaatttacgacttgcatcaaacacttccatttt |
33293353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 190 - 394
Target Start/End: Original strand, 33269534 - 33269740
Alignment:
| Q |
190 |
acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc |
289 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33269534 |
acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttc |
33269632 |
T |
|
| Q |
290 |
acttcaattagaacaccaatgtgtgaatcgcgagtg---atatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagaga |
386 |
Q |
| |
|
||||||||||||||||| ||| || || | || || |||||||||||||||| |||| |||||||||| | || ||||||||||||||||||||| |
|
|
| T |
33269633 |
acttcaattagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagaga |
33269732 |
T |
|
| Q |
387 |
cccttttt |
394 |
Q |
| |
|
|||||||| |
|
|
| T |
33269733 |
cccttttt |
33269740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 221 - 419
Target Start/End: Complemental strand, 31565117 - 31564920
Alignment:
| Q |
221 |
tgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgc |
320 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||||||| || | |||||| ||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
31565117 |
tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt |
31565018 |
T |
|
| Q |
321 |
gagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttca |
419 |
Q |
| |
|
|| || |||||||||||||||||||| | || |||| ||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
31565017 |
gaatg-tatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca |
31564920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 752 - 860
Target Start/End: Complemental strand, 24633644 - 24633536
Alignment:
| Q |
752 |
aattcagataatgtttatcatatatataagtatggagggaaggttcgggtgaaaatattcaagaaaacttagcaccctgataaagcttgtagttctggtg |
851 |
Q |
| |
|
||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24633644 |
aattcggataatattcaacatatatataagtatggagggaaggttcgggtgaaaatattcaagaaaacttagcaccctaataaagcttgtagttctggtg |
24633545 |
T |
|
| Q |
852 |
cctttaata |
860 |
Q |
| |
|
||||||||| |
|
|
| T |
24633544 |
cctttaata |
24633536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 190 - 480
Target Start/End: Original strand, 33395045 - 33395335
Alignment:
| Q |
190 |
acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctg--ccaacaaagtcggtttcaccgt |
287 |
Q |
| |
|
||||||||||||||||||| | | ||| |||||||| |||||| ||||||||||||| ||| | ||||||||| ||||||||||||||||||| || |
|
|
| T |
33395045 |
acaaactgaacctgtggacaagcagccta-ttgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagt |
33395143 |
T |
|
| Q |
288 |
tcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagac |
387 |
Q |
| |
|
|||||||||| |||||| ||| ||| |||| | || ||| |||||||||||||||| ||||||| || ||||||||||| ||||| |||||||||| |
|
|
| T |
33395144 |
tcacttcaatcagaacatagatgcgtgcatcgtcaatg-tatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagac |
33395242 |
T |
|
| Q |
388 |
cctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttctt |
480 |
Q |
| |
|
||||| | | || |||| ||| | ||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
33395243 |
cctttgttctaaggtatgattgggccttttcaagatcacctttagtttcggctaaggctttcttacagtccataatcccagcacttgtttctt |
33395335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 373 - 553
Target Start/End: Complemental strand, 28873091 - 28872911
Alignment:
| Q |
373 |
cagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacc |
472 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||| || |||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||| |
|
|
| T |
28873091 |
cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcctggaacc |
28872992 |
T |
|
| Q |
473 |
ggtttcttctcgcagttgcttaaccaaaaaggctgagaccagtaccgttgatttcctgcaacccaacattgaacaatttaa |
553 |
Q |
| |
|
||||||||||| | | | |||||||| |||| || |||| ||| ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
28872991 |
ggtttcttctcttaatcgtttaaccaatgaggccgaaaccactactgttgatttcttgcaacacaacattgaacaatttaa |
28872911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 251 - 553
Target Start/End: Original strand, 33278975 - 33279266
Alignment:
| Q |
251 |
aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct |
350 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| || || |||||||| |||||||||| | |
|
|
| T |
33278975 |
aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t |
33279069 |
T |
|
| Q |
351 |
gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct |
450 |
Q |
| |
|
||| | ||||||||||| ||||| ||| ||||||||||||| | || |||||||||| ||||||| ||| |||||| ||||||||| | || || | |
|
|
| T |
33279070 |
agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat |
33279168 |
T |
|
| Q |
451 |
tacagtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggctgagaccagtaccgttgatttcctgcaacccaacattgaacaatt |
550 |
Q |
| |
|
||||||||||| |||| ||||||||||||| | ||| ||||| || |||| || |||| ||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
33279169 |
tacagtccatcgtcccagcaccggtttctt-----aattgtttaacgaatgaggccgaaaccactactgttgatttccaacaaaacaacattgaacaatt |
33279263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 190 - 317
Target Start/End: Original strand, 33384018 - 33384148
Alignment:
| Q |
190 |
acaaactgaacctgtggac---caaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccg |
286 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| || | |
|
|
| T |
33384018 |
acaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacag |
33384117 |
T |
|
| Q |
287 |
ttcacttcaattagaacaccaatgtgtgaat |
317 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
|
|
| T |
33384118 |
ttcacttcaattagaacaccgatgtgtgaat |
33384148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 31565304 - 31565201
Alignment:
| Q |
70 |
aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga |
169 |
Q |
| |
|
|||||||| ||| |||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31565304 |
aaaacgccgcacattaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga |
31565205 |
T |
|
| Q |
170 |
agag |
173 |
Q |
| |
|
|||| |
|
|
| T |
31565204 |
agag |
31565201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 33383785 - 33383865
Alignment:
| Q |
81 |
ctttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggct |
161 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33383785 |
ctttaatgttctcgccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatgaaaggct |
33383865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 752 - 840
Target Start/End: Original strand, 33384511 - 33384598
Alignment:
| Q |
752 |
aattcagataatgtttatcatatatataagtatggagggaaggttcgggtgaaaatattcaagaaaacttagcaccctgataaagcttg |
840 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || || ||||||| || ||||||||||| |
|
|
| T |
33384511 |
aattcagataatgtttaacatatatataagcatggagggaaggttcgggtgaaaatattctag-aagcttagcatccagataaagcttg |
33384598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 33414317 - 33414420
Alignment:
| Q |
70 |
aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga |
169 |
Q |
| |
|
|||||||| |||||||||| |||| | ||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33414317 |
aaaacgccgcactttaatgttctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtcatccttaataaaaggctgctctaga |
33414416 |
T |
|
| Q |
170 |
agag |
173 |
Q |
| |
|
|||| |
|
|
| T |
33414417 |
agag |
33414420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 33292802 - 33292877
Alignment:
| Q |
102 |
cagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaag |
177 |
Q |
| |
|
||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
33292802 |
cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaag |
33292877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 376
Target Start/End: Original strand, 33406911 - 33407049
Alignment:
| Q |
237 |
caaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccga |
336 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||| ||||| |||| | ||| | | | |||||||||| |
|
|
| T |
33406911 |
caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgcataaattgtcaat-atatgtaccgg |
33407009 |
T |
|
| Q |
337 |
ttcttccttcttctgctagtctcccggatttcttatcagc |
376 |
Q |
| |
|
|| |||| || |||||||||| | ||||||||||||||| |
|
|
| T |
33407010 |
tttttccatcggctgctagtcttctggatttcttatcagc |
33407049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 33351414 - 33351497
Alignment:
| Q |
70 |
aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaat |
153 |
Q |
| |
|
|||||||| | |||||||| |||| | ||| |||||||||||| |||||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
33351414 |
aaaacgccgcgctttaatgttctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat |
33351497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 376
Target Start/End: Original strand, 33280357 - 33280482
Alignment:
| Q |
250 |
aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc |
349 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| |||||| | |
|
|
| T |
33280357 |
aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc |
33280455 |
T |
|
| Q |
350 |
tgctagtctcccggatttcttatcagc |
376 |
Q |
| |
|
| || ||| ||||||||||| ||||| |
|
|
| T |
33280456 |
ttttaatcttccggatttcttgtcagc |
33280482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 782 - 843
Target Start/End: Original strand, 33415185 - 33415246
Alignment:
| Q |
782 |
tatggagggaaggttcgggtgaaaatattcaagaaaacttagcaccctgataaagcttgtag |
843 |
Q |
| |
|
|||| ||||||| || |||| ||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
33415185 |
tatgcagggaagattagggttaaaatattcaagaaaacttagcaccatgatatagtttgtag |
33415246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 33269355 - 33269392
Alignment:
| Q |
136 |
aacactgtcatccttaatgaaaggcttctctagaagag |
173 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
33269355 |
aacactgtcatccttaataaaaggctactctagaagag |
33269392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 847; Significance: 0; HSPs: 3)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 8 - 899
Target Start/End: Original strand, 2126 - 3020
Alignment:
| Q |
8 |
agaacagacattcaacaattagaaatattttgtaagaattctgagataggtcgatggtctggaaaacgccacactttaatggtctcgcaaatgccagcta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2126 |
agaacagacattcaacaattagaaatattttgtaagaattctgagataggtcgatggtctggaaaacgccacactttaatggtctcgcaaatgccagcta |
2225 |
T |
|
| Q |
108 |
tacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaagatttccttcgtaacaaactgaacctgtgga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2226 |
tacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaagatttccttcgtaacaaactgaacctgtgga |
2325 |
T |
|
| Q |
208 |
ccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacacca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2326 |
ccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacacca |
2425 |
T |
|
| Q |
308 |
atgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2426 |
atgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgct |
2525 |
T |
|
| Q |
408 |
tgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggctg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2526 |
tgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggctg |
2625 |
T |
|
| Q |
508 |
agaccagtaccgttgatttcctgcaacccaacattgaacaatttaatatttgcatcaaagacgtccattttattctcaattttgcttgtggacaactaac |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
2626 |
agaccagtaccgttgatttcctgcaacccaacattgaacaatttaatatttgcatcaaagacgtccattttattctcaattttgcttgggtacaactaac |
2725 |
T |
|
| Q |
608 |
atctacacatgtggttacattcagttgatgcattttctaaaattattaccaatgccgacatgtcagtgtcgtggaaaatggttgtgtttgtgtcggtact |
707 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2726 |
atctgcacatgtggttacattcagttgatgcattttctaaaattattaccaatgccgacatgtcagtgtcgtggaaaatgtttgtgtttgtgtcggtact |
2825 |
T |
|
| Q |
708 |
tcgacagactaatgctcacatgtcatacacattcacaatttaataattcagataatgtttatcatatatataagtatggagggaaggttcgggtgaaaat |
807 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2826 |
ttgacagactaatgctcacatgtcatacacattcacaatttaataattcagataatgtttatcatatatataagtatggagggaaggttcgggtgaaaat |
2925 |
T |
|
| Q |
808 |
attcaagaaaacttagcaccctgataaagcttgtagttctggtgcctttaat-aatttgaagtgaatg-aaaagaatagg-aaatgagaaatgca |
899 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2926 |
attcaagaaaacttagcaccctgataaagcttgaagttctggtgcctttaataaatttgaagtgaatgaaaaagaataggaaaatgagaaatgca |
3020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 251 - 553
Target Start/End: Complemental strand, 15278 - 14987
Alignment:
| Q |
251 |
aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct |
350 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| || || |||||||| |||||||||| | |
|
|
| T |
15278 |
aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t |
15184 |
T |
|
| Q |
351 |
gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct |
450 |
Q |
| |
|
||| | ||||||||||| ||||| ||| ||||||||||||| | || |||||||||| ||||||| ||| |||||| ||||||||| | || || | |
|
|
| T |
15183 |
agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat |
15085 |
T |
|
| Q |
451 |
tacagtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggctgagaccagtaccgttgatttcctgcaacccaacattgaacaatt |
550 |
Q |
| |
|
||||||||||| |||| ||||||||||||| | ||| ||||| || |||| || |||| ||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
15084 |
tacagtccatcgtcccagcaccggtttctt-----aattgtttaacgaatgaggccgaaaccactactgttgatttccaacaaaacaacattgaacaatt |
14990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 376
Target Start/End: Complemental strand, 13896 - 13771
Alignment:
| Q |
250 |
aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc |
349 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| |||||| | |
|
|
| T |
13896 |
aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc |
13798 |
T |
|
| Q |
350 |
tgctagtctcccggatttcttatcagc |
376 |
Q |
| |
|
| || ||| ||||||||||| ||||| |
|
|
| T |
13797 |
ttttaatcttccggatttcttgtcagc |
13771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 4e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 218 - 552
Target Start/End: Complemental strand, 17447961 - 17447627
Alignment:
| Q |
218 |
acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat |
317 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||| ||||| |||||||||| |||| ||| ||| || |
|
|
| T |
17447961 |
acttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcat |
17447862 |
T |
|
| Q |
318 |
cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc-tttttgatgagatatgcttgcggcttt |
416 |
Q |
| |
|
|| || || |||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||| |||| |
|
|
| T |
17447861 |
cgtgaatg-tatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttgcgccttt |
17447763 |
T |
|
| Q |
417 |
tcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggctgagaccagta |
516 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||||||||||||||| | ||| |||||||| |||| || |||| || |
|
|
| T |
17447762 |
tcaagatcaccttcagtttcggcaagggctttcttacagtccataatcccagcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccacta |
17447663 |
T |
|
| Q |
517 |
ccgttgatttcctgcaacccaacattgaacaattta |
552 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
17447662 |
ctgttgatttcctacaaaacaacattgaacaattta |
17447627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 17445857 - 17445786
Alignment:
| Q |
102 |
cagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagag |
173 |
Q |
| |
|
||||||||||| |||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
17445857 |
cagctatactttgcctcaccaaatatttcactgaaacgctgtcatccttaatgaaaggctgctctagaagag |
17445786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 507 - 558
Target Start/End: Complemental strand, 17445402 - 17445351
Alignment:
| Q |
507 |
gagaccagtaccgttgatttcctgcaacccaacattgaacaatttaatattt |
558 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
17445402 |
gagaccactaccgttgatttcctgcaacacaacattgaacagattaatattt |
17445351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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