View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683R-Insertion-13 (Length: 300)

Name: NF2683R-Insertion-13
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683R-Insertion-13
NF2683R-Insertion-13
[»] chr4 (18 HSPs)
chr4 (10-291)||(2533897-2534178)
chr4 (16-290)||(5035207-5035481)
chr4 (8-291)||(2525339-2525622)
chr4 (8-287)||(2490716-2490995)
chr4 (15-287)||(2518821-2519093)
chr4 (8-205)||(2467212-2467412)
chr4 (9-154)||(2486021-2486173)
chr4 (66-198)||(2547221-2547353)
chr4 (81-204)||(2621417-2621540)
chr4 (81-126)||(2361217-2361262)
chr4 (77-126)||(2381641-2381690)
chr4 (77-126)||(2391269-2391318)
chr4 (86-126)||(12124594-12124634)
chr4 (96-126)||(2482529-2482559)
chr4 (145-199)||(5106632-5106686)
chr4 (242-287)||(2477156-2477201)
chr4 (145-197)||(2367981-2368033)
chr4 (70-121)||(2393836-2393888)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 2534178 - 2533897
Alignment:
Q  10 tctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaattt 109  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2534178 tctctacttccactttagacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctttgtccaagaagatgaaaaattt 2534079  T
Q  110 gacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatccttaccgac 209  Q
     |||||||||||||||||||||||||| | |||||||||||||||||||  | | |||||||||||||||||||  || |||||||||||||||||||||    
T  2534078 aacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaagaactcatccttaccgac 2533979  T
Q  210 actggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactc 291  Q
     |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  2533978 tctggttgtccccataattgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactc 2533897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 5035481 - 5035207
Alignment:
Q  16 cttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatc 115  Q
    ||||||||||| |||||||||| |||||||| |||||| ||| ||| || |||||||||||||| |||||||||||| |||||||||||| ||| || ||    
T  5035481 cttcccctttaaacctcaaatcgctcactctttaccacgctgtcagggttcctgaaaatgagttgcgagctttgtccgagaagatgaaaagtttaacgtc 5035382  T
Q  116 tctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatccttaccgacactggt 215  Q
    |||| |||||||||||||||||||||||||||||||||||||   | | |||||||||||||||||||  ||||||||||| |||||||| || ||||||    
T  5035381 tctcgcttgttatcaaatgagatttatcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaagaactaatccttactgatactggt 5035282  T
Q  216 tgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaact 290  Q
    |||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  5035281 tgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaact 5035207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 2525622 - 2525339
Alignment:
Q  8 aatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaat 107  Q
    |||||| |||| |||||||||||||||||| |||||||||||||||||   ||  || ||| |||||||||| || | |||||||||||| |||||||||    
T  2525622 aatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaaaatgaaaaat 2525523  T
Q  108 ttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatccttaccg 207  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||   | ||||||||||||||||||||   ||||||||||||||||||||||    
T  2525522 ttgacatctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattgctgattgtttccctctactcgaagaactcatccttaccg 2525423  T
Q  208 acactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactc 291  Q
    ||||||||||||    ||| ||||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  2525422 acactggttgtcgtagtaactgtgtgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactc 2525339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 2490995 - 2490716
Alignment:
Q  8 aatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaat 107  Q
    |||||| |||| |||||| ||||||||||| ||| |||||||| | ||   ||| || || | |||||| || ||||||||||||  || ||||||||||    
T  2490995 aatctccactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaat 2490896  T
Q  108 ttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatccttaccg 207  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||    | |||||||||||||||||||  ||||| ||||||||||| ||||    
T  2490895 ttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactcatcctaaccg 2490796  T
Q  208 acactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 287  Q
    |||  |||  |||||| |||| ||   |||| | |||||||| |||  ||| ||||||||||||||||| ||||||||||    
T  2490795 acaacggtaatccccaaaattatgtgctagacaatgatgatcaattattggtgcttcccaaactccgcaagattgcttta 2490716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 2519093 - 2518821
Alignment:
Q  15 acttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacat 114  Q
    |||| |||||||||||||| ||| |||||||||||||| |||  ||   | ||| || | | ||| | |||||||||  | || ||||||||||||||||    
T  2519093 actttccctttagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacat 2518994  T
Q  115 ctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatccttaccgacactgg 214  Q
     ||||||||||||| |||||| || |||| ||||||||||||||  | |||||||||||||||||||||  ||| ||||||||||||||||||| ||       
T  2518993 atctcacttgttattaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaactcatccttaccgataccat 2518894  T
Q  215 ttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 287  Q
    || | || || |||  |  ||||||| ||||  || |||| |||||||||| |||||||||| ||||||||||    
T  2518893 ttataccaatgatttggtgatagatattgattttcaattcttggcgcttcctaaactccgcaagattgcttta 2518821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 2467412 - 2467212
Alignment:
Q  8 aatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaat 107  Q
    |||||| |||| |||||| ||||||||||| |||||||||||||||||    |  || |||| | ||| ||| |||||||| |||||  |||||||||||    
T  2467412 aatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaat 2467313  T
Q  108 ttgacatctctcacttgttatcaaatgagatt---tatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatcctta 204  Q
    |||||||| ||||||||||| | |||    ||   |||| ||||||| |||||   | |||||||||||||||||||||  |||||||| ||||||||||    
T  2467312 ttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaagagctcatcctta 2467213  T
Q  205 c 205  Q
    |    
T  2467212 c 2467212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 2486173 - 2486021
Alignment:
Q  9 atctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatt 108  Q
    ||||| |||| |||||| |||||||||||||||||||||||| | ||   |||  | |||| |||||   | |||||||||||||| |||||||||||||    
T  2486173 atctccactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatt 2486074  T
Q  109 tgacatctc-------tcacttgttatcaaatgagatttatcaacaagaatga 154  Q
    |||||||||       ||| ||||||| |||| ||||||||||||||||||||    
T  2486073 tgacatctctcaatagtcaattgttataaaattagatttatcaacaagaatga 2486021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 198
Target Start/End: Complemental strand, 2547353 - 2547221
Alignment:
Q  66 cctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatca 165  Q
    |||| ||||| ||| |||||||||||  | ||||||||||||||||| ||||||| |||||   |||| |  ||||||| |||||||||| |   | |||    
T  2547353 cctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttca 2547254  T
Q  166 ttgctgattgtttcccttccctcgaagaactca 198  Q
    ||||||||||||||||||  || ||||||||||    
T  2547253 ttgctgattgtttccctttacttgaagaactca 2547221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 2621417 - 2621540
Alignment:
Q  81 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcc 180  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||| | ||| |     |||  ||||||||||||   | || |||||||||||||||    
T  2621417 cgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattcttccttgctgattgtttcc 2621516  T
Q  181 cttccctcgaagaactcatcctta 204  Q
    |||  ||||||||||||| |||||    
T  2621517 ctttactcgaagaactcaacctta 2621540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  81 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 126  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 2381641 - 2381690
Alignment:
Q  77 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 126  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2381641 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 2391269 - 2391318
Alignment:
Q  77 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 126  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2391269 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2391318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  86 tttgtccaagaagatgaaaaatttgacatctctcacttgtt 126  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 2482559 - 2482529
Alignment:
Q  96 aagatgaaaaatttgacatctctcacttgtt 126  Q
    |||||||||||||||||||||||||||||||    
T  2482559 aagatgaaaaatttgacatctctcacttgtt 2482529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 5106632 - 5106686
Alignment:
Q  145 acaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcat 199  Q
    |||||| |||||||  | |||||||||||||||||||||  ||||||||||||||    
T  5106632 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactcat 5106686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 2477201 - 2477156
Alignment:
Q  242 tgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 287  Q
    |||||||| |||  ||||||||||||||||||||| ||||||||||    
T  2477201 tgatgatcaattgttggcgcttcccaaactccgcaagattgcttta 2477156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 2367981 - 2368033
Alignment:
Q  145 acaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactc 197  Q
    |||||| |||||||  | |||||||||||||||||||||  ||||||||||||    
T  2367981 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactc 2368033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 2393836 - 2393888
Alignment:
Q  70 aaaatgagttccgagctttgtccaagaagatg-aaaaatttgacatctctcac 121  Q
    |||||| ||| |||||||||||| | |||||| ||||||||||||||||||||    
T  2393836 aaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctctcac 2393888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University