View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683R-Insertion-14 (Length: 280)

Name: NF2683R-Insertion-14
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683R-Insertion-14
NF2683R-Insertion-14
[»] chr4 (5 HSPs)
chr4 (159-280)||(26056483-26056606)
chr4 (183-280)||(26085720-26085817)
chr4 (160-266)||(26112067-26112173)
chr4 (9-79)||(26086401-26086471)
chr4 (11-61)||(26112275-26112325)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 26056606 - 26056483
Alignment:
Q  159 ctccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaaga--atgtttgagaggctagtagttcaatcaaattca 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  26056606 ctccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatatgtttgagaggctagtagttcaatcaaattca 26056507  T
Q  257 gtatcaaagtccaagtactgaata 280  Q
    || |||||||| ||||||||||||    
T  26056506 gtttcaaagtcgaagtactgaata 26056483  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 26085817 - 26085720
Alignment:
Q  183 ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtccaagtactgaata 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26085817 ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtcgaagtactgaata 26085720  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 160 - 266
Target Start/End: Complemental strand, 26112173 - 26112067
Alignment:
Q  160 tccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagta 259  Q
    |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  26112173 tccaaaatcacatattcctttatctatatataggtatagatgtattctcatattcccatcaagaatatttgagaggctagtagttcaatcaaattcagtt 26112074  T
Q  260 tcaaagt 266  Q
    |||||||    
T  26112073 tcaaagt 26112067  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 26086471 - 26086401
Alignment:
Q  9 cctggaccttgacttaacccatttattgtggacgacccaaaggatagttgggttggtattcttaacattac 79  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||    
T  26086471 cctggaccttgacttaacccatttattgtagacgacccaaaggataattgggtcggtattcttaacattac 26086401  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 26112325 - 26112275
Alignment:
Q  11 tggaccttgacttaacccatttattgtggacgacccaaaggatagttgggt 61  Q
    |||| ||||||||||| |||||||| |||||||||||||||||| ||||||    
T  26112325 tggatcttgacttaactcatttattatggacgacccaaaggataattgggt 26112275  T

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