View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683R-Insertion-15 (Length: 239)
Name: NF2683R-Insertion-15
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683R-Insertion-15 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 314951 - 315179
Alignment:
| Q |
9 |
gtaagacacttcctcaaaccgcttaaacaataacatgcaacataaaaatggttatattgtaattagttttttattttgtacctaagttagctctgacaac |
108 |
Q |
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| T |
314951 |
gtaagacacttcctcaaaccgcttaaacattaacatgcaacataaaaatggttatatagtaa--agttttttaattagtacctaggttagctctgacaac |
315048 |
T |
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| Q |
109 |
ttcagtgtaagtgtagtttctcttgccatgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaatgaaaatgca |
208 |
Q |
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| T |
315049 |
ttcagtgtaagtgtagtttctcttgccatgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaaagaaaatgca |
315148 |
T |
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| Q |
209 |
aagagaactgcaggaccagcaacccaaccca |
239 |
Q |
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| T |
315149 |
aagagaactgcaggaccagctacccaaccca |
315179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 51719763 - 51719883
Alignment:
| Q |
119 |
gtgtagtttctcttgccatgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaatgaaaatgcaaagagaactg |
218 |
Q |
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| T |
51719763 |
gtgtaatttcttttgccatgaacagggtcaggtgaacgataagaatcagcaagaagagtggaagtgaaataagttataaaagagaaagcaagtagaactg |
51719862 |
T |
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| Q |
219 |
caggaccagcaacccaaccca |
239 |
Q |
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| T |
51719863 |
ctgggccagcaatccaaccca |
51719883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 51539048 - 51538988
Alignment:
| Q |
124 |
gtttctcttgccatgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtg |
184 |
Q |
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| T |
51539048 |
gtttctcttgccagtaacaggatcaggtgatctataacaatcagcaagaagatttgaagtg |
51538988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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