View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683R-Insertion-2 (Length: 905)
Name: NF2683R-Insertion-2
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683R-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 808; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 9 - 905
Target Start/End: Original strand, 48481974 - 48482871
Alignment:
| Q |
9 |
agctcagaacaccaaaacaagaagattaccgtattgttgttcaattgagttattgcacttaaagaatgaaggtttggtcccccaagcaagagaattattg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48481974 |
agctcagaacaccaaaacaagaagattaccgtattgttgttcaattgagttattgcacttaaagaatgaaggtttggtcccccaagcaagtgaattattg |
48482073 |
T |
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| Q |
109 |
gtgcatcatccttctggcaatatagaagaaaaagtattgaatgagaccaaattaaagaaattagataacaatctattacatagttttcgaggcagcagaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48482074 |
gtgcatcatccttctggcaatatagaagaaaaagtattgaatgagaccaaattaaagaaattagataacaatctattacatagttttcgatgcagcagaa |
48482173 |
T |
|
| Q |
209 |
aaaccgcaagtgactatgtatgaattcaaagcagaagcctagagaagttgataacttgatctaaacttgttcnnnnnnngcaatgaaaataagtacctta |
308 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
48482174 |
aaactgcaagtgactatgtatgaattcaaagcagaagcctagagaagttgataacttgatctaaacttgttctttttttgcgatgaaaataagtacctta |
48482273 |
T |
|
| Q |
309 |
tttggaggccttttgtaaacacgacacttggcggcagatatcggctcaacctcataatgttcagaggttgaaggttcaaggagttctaagttatttgatg |
408 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48482274 |
ttgggaggccttttgtaaacacgacacttggcggcagatattggctcaacctcataatgttcagaggttgaaggttcaaggagttctaagttatttgatg |
48482373 |
T |
|
| Q |
409 |
aaataagctttgatcctctaaagcgtcccttgtgattttgaagtgaagttcttggagagaatacccccagaggggtatgcacaaccactactgaatctgg |
508 |
Q |
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| T |
48482374 |
aaataagctttgatcctctaaagcgtcccttgtgattttgaagtgaagttcttggagagaatacccccagaggggtatgcacaaccactactgaatctgg |
48482473 |
T |
|
| Q |
509 |
atttgggaccctaaaatgaaattaaaatgtaaaaacagtttttcaaaagaacacatggaaaataagattagcataattgaaagaccagagctcaaacctg |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48482474 |
atttgggaccctaaaatgaaattaaaatgtaaaaacagtttttcaaaagaacacatggaaaataagattagcataattggaagaccagagctcaaacctg |
48482573 |
T |
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| Q |
609 |
tgaactgcacaatatattagcgtctgtgttatttgagtcccctccttcactgtagaacgcaactgtacatttaaacaatatcaacatattttcccagcag |
708 |
Q |
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| T |
48482574 |
tgaactgcgcaatatattagcgtctgtgttatttgagtccccttcttcactgtagaacgcaactgtacatttaaacaatatcaacatattttcccagcag |
48482673 |
T |
|
| Q |
709 |
cggaagtaatagccatgtaactaaatgcttacttccataaaaatctatatattgattatggacataaatgactttgctgccctccnnnnnnngagcaaat |
808 |
Q |
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| T |
48482674 |
cggaagtaatagccatgtaactaaatgcttacttccataaaaatctatatattgattatggacataaatgactttgctgccctccaaaaaaagagcaaat |
48482773 |
T |
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| Q |
809 |
tcagaagaaaaagtagcagcttcagatcaaggactagtttgaatttaagt-aaaggatcatcatacttaccgccatgctatatcccatccttgatgca |
905 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48482774 |
tcagaagaaaaagtagcagcttcagatcaaggactagtttaaatttaagtaaaaggatcatcatacttaccgccatgctatatcccatccttgatgca |
48482871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 10040239 - 10040193
Alignment:
| Q |
33 |
attaccgtattgttgttcaattgagttattgcacttaaagaatgaag |
79 |
Q |
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| T |
10040239 |
attaccttatagttgttcaattgagttatttcacctaaagaatgaag |
10040193 |
T |
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