View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683R-Insertion-3 (Length: 798)
Name: NF2683R-Insertion-3
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683R-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 167 - 792
Target Start/End: Original strand, 4440322 - 4440947
Alignment:
| Q |
167 |
cctattaaaattccctctcttttaagcatccttgtccctatagatgataagaattgctcttgagtagaccttagtaaactcccatgcaagatctgtgaca |
266 |
Q |
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| T |
4440322 |
cctattaaaattccctctcttttaagcatccttgtccctaaagatgataagaattgctcttgagtagatcttagtaaactcccatgcaagatctgtgaca |
4440421 |
T |
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| Q |
267 |
tgaacgaccacaaacacatcaatattagcagaaaacttctatgtaccacactgccatgcttaggaggcaagtcccttcatttgagaatcatttgaggaac |
366 |
Q |
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| T |
4440422 |
tgaacgaccacaaacacatcaatattagcagaaaacttctatgtaccacactgccatgcttaggaggcaagtcccttcatttgagaatcatttgaggaac |
4440521 |
T |
|
| Q |
367 |
attggaaagcaatgcatttctccaccctattggaactttgtaggactattgcttctcttgttgccaatgctattgtgccaggaacaattaacatcctatc |
466 |
Q |
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| T |
4440522 |
attggaaagcaatgcatttctccaccctattggaactttgtaggattattgcttctcttgttgccaatgctattgtgccaggaataattaacatcctatc |
4440621 |
T |
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| Q |
467 |
taattctttagactaattaaattcaacaaattcaggcctgttataagtgcacctactaacatagacaaattgagtgatggtattgtaacaacgatatcag |
566 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |
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| T |
4440622 |
taattctttagacaaattaaattcaacaaattcaggcctgttataagtgcacctactaacatagacaaattgagtgacggtattgtaaaaacgatgtcag |
4440721 |
T |
|
| Q |
567 |
gtgattctactggcggtgtgcaatcagctagtgattagatgaggatgttgtctctatctatgacgcattcttcctaattggtgtgtctttgacttttttg |
666 |
Q |
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| T |
4440722 |
gtggttctactggcggtgtgcaatcagctagtgattagatgaggatgttgtctctatctatgacgcattcttcctaattggtgtgtctttgacttttttg |
4440821 |
T |
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| Q |
667 |
tatatgctaactgtagagcttaaggtctcatgtgttttagatagctcgacaaaatgttcaaatttcaattggtgtgcgcttagaaaattttgcaaacata |
766 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4440822 |
tatatgctaactgtagagcttaaggtctcatgtgttttagatagctcgacaaaatgttcaaatttcaattggtgtgcgcttagaaaattttgtaaacata |
4440921 |
T |
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| Q |
767 |
tgtgatgtatttcccaatcttgttaa |
792 |
Q |
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| T |
4440922 |
tgtgatgtattttccaatctagttaa |
4440947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 4440164 - 4440218
Alignment:
| Q |
9 |
agttttagagagaatgagataattgttgaaatgttagattgcaaatgaggcactc |
63 |
Q |
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| T |
4440164 |
agttttagagagaatcagataattgttgaaatgttagattgcaaatgaggcactc |
4440218 |
T |
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