View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683R-Insertion-4 (Length: 756)

Name: NF2683R-Insertion-4
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683R-Insertion-4
NF2683R-Insertion-4
[»] chr4 (1 HSPs)
chr4 (9-751)||(28155709-28156468)


Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 9 - 751
Target Start/End: Original strand, 28155709 - 28156468
Alignment:
Q  9 gatttcacgtgagagttctgccacttgtgtccgtgagttttgcaaaacctgaatgaacagaacagtttggagaaaccaacattaaccaaaccaaaccact 108  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||     ||| ||||||||||||||||||||||||     ||    
T  28155709 gatttcacgtgagagttctgccact-gtgtccgtgagttttgcaaaacccgaatgaacag-----tttcgagaaaccaacattaaccaaacca-----ct 28155797  T
Q  109 ttaaccacagtaagtgtttccattttcatggactcattgcctcacaca----------------atgttctgctcaatgaatcaaaatgtgaagaagcaa 192  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |                ||||||||||||||||||||||||||||||||||||    
T  28155798 ttaaccacagtaagtgtctccattttcatggactcattgcctcacatacacttccatgccaataatgttctgctcaatgaatcaaaatgtgaagaagcaa 28155897  T
Q  193 ctaccaattgtagatctcaagagttaagtaggtgaatcaaatcaacccctacccaaccacatgcattaaacaatttcgatatcttccacacaaattaaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28155898 ctaccaattgtagatctcaagagttaagtaggtgaatcaaatcaacccctacccaaccacatgcattaaacaatttcgatatcttccacacaaattaaca 28155997  T
Q  293 atagcttattgttaacaaaaaccaaattagctacaacatacacctaattactagct---------------------ctggtgttgttgggtccattttg 371  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||                     |||||||||||||||||||||||    
T  28155998 atagcttattgttaacaaaaaccaaattagcttaaacatacacctaattactagctactactagtactatactagctctggtgttgttgggtccattttg 28156097  T
Q  372 ttgttcatcctaaaatggagaaactctcattctcttctttctcttctttgttttccatcacatttttactatgtctgatcttgtctcttcaaccatcaag 471  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28156098 ttgttcatcctaaaatggagaaactctcattct---------cttctttgttttccatcacatttttactatgtctgatcttgtctcttcaaccatcaag 28156188  T
Q  472 atcacaaaaagacgattcacaaccacttctcgcactcaaatcctccgtagatattcacaacaaactgccatggccagagaagaagaacaatgatgtttgc 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28156189 atcacaaaaagacgattcacaaccacttctcgcactcaaatcctccgtagatattcacaacaaactgccatggccagagaagaagaacgatgatgtttgc 28156288  T
Q  572 acttgggtgggagttaaagattgttacaaaggcaaagttagaaagctagtactcgaatatttcaacttaactgggaaattagattcaaacattttaaacc 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28156289 acttgggtgggagttaaagattgttacaaaggcaaagttagaaagctagtactcgaatatttcaacttaactgggaaattagattcaaacattttaaacc 28156388  T
Q  672 gtttggatcaacttcgagttcttagtttcaaaggaaactcactttcgggtcaaattcctaatctctcaaatcttgttaat 751  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  28156389 gtttggatcaacttcgagttcttagtttcaaaggaaactcgctttcgggtcaaattcctaatctttcaaatcttgttaat 28156468  T

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