View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683R-Insertion-5 (Length: 607)

Name: NF2683R-Insertion-5
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683R-Insertion-5
NF2683R-Insertion-5
[»] chr1 (1 HSPs)
chr1 (9-607)||(47261968-47262566)


Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 9 - 607
Target Start/End: Complemental strand, 47262566 - 47261968
Alignment:
Q  9 ccaagtccttctcccaactctcaaaacccttcgttcattccctctccaagttaaaaaacactgctacaatattcctgtgtatcgcggtgcaaaatatatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47262566 ccaagtccttctcccaactctcaaaacccttcgttcattccctctccaagttaaaaaacactgctacaatattcctgtgtatcgcggtgcaaaatatatg 47262467  T
Q  109 atacgtactacttatttctacggtggagccaacggtgttgatcatcttacgccgccggtgtttgatcagatcgttgatggaacgttatggagtgtggtga 208  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47262466 atacgtactacttatttctacggtggagtcaacggtgttgatcatcctacgccgccggtgtttgatcagatcattgatggaacgttatggagtgtggtga 47262367  T
Q  209 atactacggtggattatgctaatggaaactcgagtttttatgaaggggtatttttggctgtggggaagtttatgagtttttgtatcgggtcgaatagtta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47262366 atactacggtggattatgctaatggaaactcgagtttttatgaaggggtatttttggctgtggggaagtttatgagtttttgtatcgggtcgaatagtta 47262267  T
Q  309 tacggattctgacccgtttgtttctgctttggagtttttgattcttggagattccttgtataataccactgattttaacaactttgctattggtttggtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47262266 tacggattctgacccgtttgtttctgctttggagtttttgattcttggagattccttgtataataccactgattttaacaactttgctattggtttggtt 47262167  T
Q  409 gctagaaatagctttggttactccggaccaagcataaggttagttggacttggacactgttttcttcaacttttgtcaagttttgatgatattaatcttt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47262166 gctagaaatagctttggttactccggaccaagcataaggttagttggacttggacactgttttcttcaacttttgtcaagttttgatgatattaatcttt 47262067  T
Q  509 atgtggttggtacttggtagatatatagaatatagatcattatcatttagttgtggttatactgtatctgtaaaatttcctaagtttttgttgtcctat 607  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47262066 atttggttggtacttggtagatatatagaatatagatcattatcatttagttgtggttatactgtatctgtaaaatttcctaagtttttgttgtcctat 47261968  T

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