View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2683R-Insertion-6 (Length: 310)
Name: NF2683R-Insertion-6
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683R-Insertion-6 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 44911625 - 44911730
Alignment:
| Q |
205 |
gcctatgctttcaaagcatcatcatgtttatcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44911625 |
gcctatgctttcaaagcatcatcatgtttatcaaaattatttcacaccatgacagagggtcaggaatttaactaccataaaacatccaatttaccgttca |
44911724 |
T |
|
| Q |
305 |
tgccat |
310 |
Q |
| |
|
|||||| |
|
|
| T |
44911725 |
tgccat |
44911730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 3769176 - 3769101
Alignment:
| Q |
235 |
tcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccat |
310 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3769176 |
tcaaaattatttcacaccatcacagggggtcaggaatttaactaccatagaacctccaatttaccgttcatgccat |
3769101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 3928541 - 3928612
Alignment:
| Q |
235 |
tcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
3928541 |
tcaaaattatttcacaccatcacagagggtcaggaatttaactaccatagaaccttcaatttaccgttcatg |
3928612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 6353891 - 6353966
Alignment:
| Q |
235 |
tcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccat |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6353891 |
tcaaaattatttcacaccatcagagagggtcatgaattaaactaccatagaacctccaatttaccgttcatgccat |
6353966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 30372929 - 30372883
Alignment:
| Q |
260 |
agggtcaggaatttaactaccataaaacctccaatttaccgttcatg |
306 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
30372929 |
agggtcaggaatttaactaccatagatcctccaatttaccgttcatg |
30372883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University