View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683R-Insertion-7 (Length: 380)

Name: NF2683R-Insertion-7
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683R-Insertion-7
NF2683R-Insertion-7
[»] chr2 (2 HSPs)
chr2 (9-380)||(11804239-11804610)
chr2 (321-377)||(11811986-11812042)


Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 11804610 - 11804239
Alignment:
Q  9 tcatgcaccaaatagccgcaccagttatctatagagtaccaaaatcacaataaatagtccatctacataattgattatagattagattattagagttatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11804610 tcatgcaccaaatagccgcaccagttatctatagagtaccaaaatcacaataaatagtccatctacataattgattatagattagattattagagttatt 11804511  T
Q  109 tagttgaagttggtaatgaacatcaattaagtgtaaatcattccgaaaaaataaagttcaaatccatactnnnnnnntttatgcacattacttaactttc 208  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       | | |||||||||||||||||||    
T  11804510 tagttgaagttggtaatgaacttcaattaagtgtaaatcattccgaaaaaataaagttcaaatccatactaaaaaactctttgcacattacttaactttc 11804411  T
Q  209 aactgaactttaaatttttatgggtcccaatttcctagaaaccagaggaatccgtttatatgggctaaatttttaatcaacgatcaagatcacagtttgt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11804410 aactgaactttaaatttttatgggtcccaatttcctagaaaccagaggaatccgtttatatgggctaaatttttaatcaacgatcaagatcacagtttgt 11804311  T
Q  309 ggttaggaatacatttacaaataaacatggcctttacatacacaaaattagcactcctatcaatcataagct 380  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11804310 ggttaggaatacatttacaaataaacatggcatttacatacacaaaattagcactcctatcaatcataagct 11804239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 11812042 - 11811986
Alignment:
Q  321 atttacaaataaacatggcctttacatacacaaaattagcactcctatcaatcataa 377  Q
    |||| |||||||||||||  ||| |||||||||||||||||||| ||||| ||||||    
T  11812042 atttccaaataaacatgggatttgcatacacaaaattagcactcttatcagtcataa 11811986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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