View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683R-Insertion-9 (Length: 500)
Name: NF2683R-Insertion-9
Description: NF2683R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683R-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 3923785 - 3924102
Alignment:
| Q |
9 |
tgtttgacgtgtgatgttccgtaatgttccatattcacacaattacacatagtcactgataagtactgaaccgatggatcaagagtagaaggcatatgtt |
108 |
Q |
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| T |
3923785 |
tgtttgacgtgtgatgttccgtaatgttccatattcacacaattacacatagttactgataagtaccgaactgatggatcaagagtagaaggcatatgtt |
3923884 |
T |
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| Q |
109 |
ttgactttgtattatcattacagacttgatttaccaaagttggaacttgaatttatctaatcatgatttaacggtccatgtattatcatgtaattggttt |
208 |
Q |
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| T |
3923885 |
ttgactttgtatcatcattacagacttgatttaccaaagttggaacttgaatttatctaatcaagatttaacggtccatgtattatcatgtaattggttt |
3923984 |
T |
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| Q |
209 |
aatgtgtgattttcctgactaacggtcaatgcattgctatctgatcttggttcaatggtccatatcacgtacttgtgtttggtgtgtggtttcgtgactc |
308 |
Q |
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| T |
3923985 |
aatgtgtga-tttcctgactaacggtccatgcattgctatctgatcttggttcaatggtccatatcacgtacttgtgtttggcgtgtggtttcgtgactc |
3924083 |
T |
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| Q |
309 |
ctgagaatctgaaacttat |
327 |
Q |
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| T |
3924084 |
ctgagaatctgaaacttat |
3924102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 3907389 - 3907577
Alignment:
| Q |
32 |
atgttccatattcacacaattacacatagtcactgataagtactgaaccgatggatcaagagtagaaggcatatgttttgactttgtattatcattacag |
131 |
Q |
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| T |
3907389 |
atgttccggattcacacaattacatatagtcattgttaagtaccgaactgatggatcaagattagaaggcatatgtttccactatgtattatcattacag |
3907488 |
T |
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| Q |
132 |
acttgatttaccaaagttggaacttgaatttatctaatcatgatttaacggtccatgtattatcatgtaattggtttaatgtgtgattt |
220 |
Q |
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| T |
3907489 |
acttgatttaccaaagttggaacttgaatttatctaatcatgatttaacggtccatgtattatcatgtaattggtttaatgtgtgattt |
3907577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 363 - 500
Target Start/End: Original strand, 3907678 - 3907817
Alignment:
| Q |
363 |
aacaaatatttcatctcccaatttataagtcaatacatctaatattgatatttctacacatat--ttgcagctcgtggaccagaaatcatcatcgaatgg |
460 |
Q |
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| T |
3907678 |
aacaaatatttcatctcctaatttataagttaatacatctgatattgatatttctgcacatatatttgcagctcgtggacctgaaattgtcgtcgaatgg |
3907777 |
T |
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| Q |
461 |
ccaacaaggatgaaaatagcaattggaatcacaaatggtc |
500 |
Q |
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| T |
3907778 |
ccaacaaggatgaaaatagctattggaatcactaatggtc |
3907817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 3907602 - 3907652
Alignment:
| Q |
329 |
ttgaaattagaatgcatagctaatcttattagttaacaaatatttcatctc |
379 |
Q |
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| T |
3907602 |
ttgaaattagaatgcatagctagtcttattagttaacaaatatttcatctc |
3907652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 413
Target Start/End: Original strand, 3923288 - 3923365
Alignment:
| Q |
335 |
ttagaatgcatagctaatcttattagttaacaaatatttcatctcccaatttataagtcaatacatctaatattgatat |
413 |
Q |
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| T |
3923288 |
ttagaatgcattgctaatc-tattagttaataagtcttttatctcttaatttataagccaatacttctgatattgatat |
3923365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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