View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_high_10 (Length: 441)

Name: NF2683_high_10
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_high_10
NF2683_high_10
[»] chr5 (12 HSPs)
chr5 (17-425)||(6151971-6152380)
chr5 (87-424)||(6145855-6146193)
chr5 (87-416)||(6126439-6126769)
chr5 (89-424)||(34283641-34283975)
chr5 (157-424)||(34282628-34282895)
chr5 (281-361)||(6139357-6139437)
chr5 (21-77)||(6145555-6145611)
chr5 (337-381)||(33802369-33802413)
chr5 (17-76)||(33802904-33802963)
chr5 (20-77)||(6126135-6126192)
chr5 (17-76)||(33731525-33731584)
chr5 (337-381)||(33731025-33731068)
[»] scaffold0008 (2 HSPs)
scaffold0008 (281-397)||(7802-7917)
scaffold0008 (281-397)||(18383-18498)
[»] chr4 (1 HSPs)
chr4 (281-361)||(25364154-25364234)


Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 6151971 - 6152380
Alignment:
Q  17 aagtagatcacctgatccattaactagaggtgaaacttctaatcaaggtttacaagttgacccttcgccgagtagttttgtaccaccacggcaaccaata 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6151971 aagtagatcacatgatccattaactagaggtgaaacttctaatcaaggtttacaagttgacccttcgccgagtagttctgtaccaccacggcaaccaata 6152070  T
Q  117 acgactttaaacccttcgccgagtaattattaccagctaaaccctcctccagctcctcttggattcggatttactattgctgcgcaaactgatcagtaca 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6152071 acgactttaaacccttcaccgagtaattattaccagctaaaccctcctccagctcctcttggattcggatttactattgctgcacaaactgatcagtaca 6152170  T
Q  217 ttcagactagttcaggatcgccaagatcagagaatgtagctagccatggtggcattcaccacaatttcatttcaacttctcatgaacttaggccagagag 316  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6152171 ttcagactagttcaggatcgccaagatcagagaatgtaactagccatggtggcattcaccacaatttcatttcaacttctcatgaacttaggccagagag 6152270  T
Q  317 gaacaggctcaggattgaggtatatatactttcttaattacttgttaatattaactttggttga-attagtataaatgaattcacggttaaagatgtgct 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6152271 gaacaggctcaggattgaggtatatatactttcttaattacttgttaatattaactttggttgatattagtataaatgaattcacggttaaagatgtgct 6152370  T
Q  416 ttattttcat 425  Q
    ||||||||||    
T  6152371 ttattttcat 6152380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 87 - 424
Target Start/End: Original strand, 6145855 - 6146193
Alignment:
Q  87 agtagttttgtaccaccacggcaaccaataacgactttaaacccttcgccgagtaattattaccagctaaaccctcctccagctcctcttggattcggat 186  Q
    ||||||| ||||||||| |  ||| |||||| ||||| | || |||| ||||||||| |||||| ||||||||||||| |  |||||||||||| ||||     
T  6145855 agtagttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccctccttcgtctcctcttggatccggac 6145954  T
Q  187 ttactattgctgcgcaaactgatcagtacattcagactagttcaggatcgccaagatcagagaatgtagctagccatggtggcattcaccacaatttcat 286  Q
    ||||||||| ||| ||||||||| |||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  6145955 ttactattgttgcacaaactgatgagtacattcaaactggttcaggatcgccaagattagagaatgtagctagccatggtggcattcaccacaatttaat 6146054  T
Q  287 ttcaacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaattacttgttaatattaactttggttga-attag 385  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| | ||||||| ||||||| ||||||||||| |||||    
T  6146055 ttcaacttctcatgaacttaggccagagaggaacaggcacagggttgaggtacatatactttctaagttacttgataatattgactttggttgatattag 6146154  T
Q  386 tataaatgaattcacggttaaagatgtgctttattttca 424  Q
    |||||||||||||| | |||||||||||||| |||||||    
T  6146155 tataaatgaattcatgtttaaagatgtgcttcattttca 6146193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 87 - 416
Target Start/End: Original strand, 6126439 - 6126769
Alignment:
Q  87 agtagttttgtaccaccacggcaaccaataacgactttaaacccttcgccgagtaattattaccagctaaaccctcctccagctcctcttggattcggat 186  Q
    ||||||| | |||||||||  ||||||||||| |||| | || |||||| |||||||||| ||| |||||||||||||||   ||||||||||| |||||    
T  6126439 agtagttctataccaccacaacaaccaataacaacttcagacgcttcgctgagtaattataaccggctaaaccctcctccgtttcctcttggatccggat 6126538  T
Q  187 ttactattgctgcgcaaactgatcagtacattcagactagttcaggatcgccaagatcagagaatgtagctagccatggtggcattcaccacaatttcat 286  Q
    ||||||||||||| ||||||||||||||||| ||||||   |||||||  |||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  6126539 ttactattgctgcacaaactgatcagtacatccagactgaatcaggattaccaagatcagagaatgtagctagccatggtggcatttacggcaatttcat 6126638  T
Q  287 ttcaacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaattacttgttaatattaactttggtt-gaattag 385  Q
    ||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||| ||||||| |||||||||||||| || | |||||    
T  6126639 ttcaacttctcatgaacttaggctagagaggaacatgctcatggttgaggtatatatactttcttagttacttgataatattaactttgtttggtattag 6126738  T
Q  386 tataaatgaattcacggttaaagatgtgctt 416  Q
    |||||||||||||| ||||||||||||||||    
T  6126739 tataaatgaattcatggttaaagatgtgctt 6126769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 89 - 424
Target Start/End: Original strand, 34283641 - 34283975
Alignment:
Q  89 tagttttgtaccaccacggcaaccaataacgactttaaacccttcgccgagtaattattaccagctaaaccctcctccagctcctcttggattcggattt 188  Q
    |||||||||||||||||| |||||||||||||||| | | ||| |  |||||||||||||   |||||||||| ||||| ||| || |||||  ||||||    
T  34283641 tagttttgtaccaccacgacaaccaataacgacttcagatcctccatcgagtaattatta---gctaaacccttctccatctcttcctggatcgggattt 34283737  T
Q  189 actattgctgcgcaaactgatcagtacattcagactagttcaggatcgccaagatcagagaatgtagctagccatggtggcattcaccacaatttcattt 288  Q
    ||||||| ||  ||||||  |||||||||| ||||| |||||||||||| ||||||||||| ||||| | ||  |   || | | |||||||||||||||    
T  34283738 actattgatgtacaaactattcagtacatttagactggttcaggatcgcaaagatcagagactgtagttcgctctaacggtagttaccacaatttcattt 34283837  T
Q  289 caacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaattacttgttaatattaactttggttga--attagt 386  Q
    ||| |||||||||||||  |  ||||||| | | ||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||  |||||     
T  34283838 caaattctcatgaactttcgatagagagggaaatgctcagggttgaggtatatatgctttcttaattacttattaatattaaatttggttgaagattaga 34283937  T
Q  387 ataaatgaattcacggttaaagatgtgctttattttca 424  Q
    |||||||||||||| |||||  |||||||| |||||||    
T  34283938 ataaatgaattcaccgttaataatgtgcttcattttca 34283975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 424
Target Start/End: Complemental strand, 34282895 - 34282628
Alignment:
Q  157 accctcctccagctcctcttggattcggatttactattgctgcgcaaactgatcagtacattcagactagttcaggatcgccaagatcagagaatgtagc 256  Q
    ||||| ||||| |||||| |||||  |||||||||||||  || || ||| | || ||||||||  |||||||| |||  ||||||||||||| |  |||    
T  34282895 acccttctccatctcctcctggatcgggatttactattgtcgcacagactaaccaatacattcatgctagttcaagatttccaagatcagagact--agc 34282798  T
Q  257 tagccatggtggcattcaccacaatttcatttcaacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaatta 356  Q
    |  |  | |||||| | ||||||||||||||||||||||||||||| ||  |  |||||||    |||||||| ||| |||||| || ||||||||||||    
T  34282797 tcactctagtggcacttaccacaatttcatttcaacttctcatgaaattttgatagagagggcatggctcagggttggggtataaattctttcttaatta 34282698  T
Q  357 cttgttaatattaactttggttga--attagtataaatgaattcacggttaaagatgtgctttattttca 424  Q
    ||||||||||||||| ||||||||  ||||| |||||||||||||| |||||  |||||||  |||||||    
T  34282697 cttgttaatattaacattggttgaatattagaataaatgaattcaccgttaataatgtgctccattttca 34282628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 6139357 - 6139437
Alignment:
Q  281 tttcatttcaacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaattacttgt 361  Q
    |||||||||||||||| |||||||||||  ||||||||||   ||||||  ||||||||||||||||||||||||||||||    
T  6139357 tttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatatactttcttaattacttgt 6139437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 6145555 - 6145611
Alignment:
Q  21 agatcacctgatccattaactagaggtgaaacttctaatcaaggtttacaagttgac 77  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  6145555 agatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaagttgac 6145611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 33802413 - 33802369
Alignment:
Q  337 tatatatactttcttaattacttgttaatattaactttggttgaa 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33802413 tatatatactttcttaattacttgttaatattaactttggttgaa 33802369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 33802963 - 33802904
Alignment:
Q  17 aagtagatcacctgatccattaactagaggtgaaacttctaatcaaggtttacaagttga 76  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||    
T  33802963 aagtagatcgcctgatccattcactagaggtgaaacttctaatcaaggttcacaaattga 33802904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 6126135 - 6126192
Alignment:
Q  20 tagatcacctgatccattaactagaggtgaaacttctaatcaaggtttacaagttgac 77  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||    
T  6126135 tagatcacccgatccattcattagaggtgaaacttctaatcaaggttcacaagttgac 6126192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 33731584 - 33731525
Alignment:
Q  17 aagtagatcacctgatccattaactagaggtgaaacttctaatcaaggtttacaagttga 76  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||| ||||    
T  33731584 aagtagatcgcctgatccattcactagaggggaaacttctaatcaaggttcacaaattga 33731525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 33731068 - 33731025
Alignment:
Q  337 tatatatactttcttaattacttgttaatattaactttggttgaa 381  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  33731068 tatatatactttcttaattacttg-taatattaactttggttgaa 33731025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 7917 - 7802
Alignment:
Q  281 tttcatttcaacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaattacttgttaatattaactttggttg- 379  Q
    |||||||||||||||| |||||||||||  || |||||||   ||||||  |||||||||||||||||||||||||||||| | ||||   ||||||||     
T  7917 tttcatttcaacttctgatgaacttagggaagggaggaacgctctcagggatgaggtatatatactttcttaattacttgtgattatt---tttggttgt 7821  T
Q  380 -aattagtataaatgaatt 397  Q
      |||||||||||||||||    
T  7820 tcattagtataaatgaatt 7802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 18498 - 18383
Alignment:
Q  281 tttcatttcaacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaattacttgttaatattaactttggttg- 379  Q
    |||||||||||||||| |||||||||||  || |||||||   ||||||  |||||||||||||||||||||||||||||| | ||||   ||||||||     
T  18498 tttcatttcaacttctgatgaacttagggaagggaggaacgctctcagggatgaggtatatatactttcttaattacttgtgattatt---tttggttgt 18402  T
Q  380 -aattagtataaatgaatt 397  Q
      |||||||||||||||||    
T  18401 tcattagtataaatgaatt 18383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 25364154 - 25364234
Alignment:
Q  281 tttcatttcaacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaattacttgt 361  Q
    |||||||||||||||| |||||||||||  ||||||||||   |||| |  |||||||||||| |||||||||||||||||    
T  25364154 tttcatttcaacttctgatgaacttagggaagagaggaacgctctcatggatgaggtatatatgctttcttaattacttgt 25364234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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