View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_11 (Length: 419)
Name: NF2683_high_11
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 185 - 394
Target Start/End: Original strand, 35015921 - 35016130
Alignment:
| Q |
185 |
gaaccgatctcaattaaatctggttcaaccaacgtacgatataattgggatcaaaccaattgagaaacttatcggttttctagctcaccccgttgaaccg |
284 |
Q |
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| T |
35015921 |
gaaccgatctcaattaaatctggttcaaccaatgtacggtataattgggatcaaaccaattgaaaaacttatcggttttctagctcaccccgttgaaccg |
35016020 |
T |
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| Q |
285 |
aaagttcggtccggtttttaaaactttaattgatttccctcctctctttctcatctccctatatatatcctttattctaacacattccctcatatcataa |
384 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35016021 |
aacgttcggtccggtttttaaaactttaattaatttccctcctctctttctcatctccctatatatatcctttattctaacacattccctcatatcataa |
35016120 |
T |
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| Q |
385 |
caaccaaaac |
394 |
Q |
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|||| ||||| |
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| T |
35016121 |
caactaaaac |
35016130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 35015751 - 35015894
Alignment:
| Q |
15 |
aaatgtatgttcgatattacggtggatgtgtcaaaatcacaatgacctatcataattttgcagaaactacaaagtgtagcttttagacaatcacgatgga |
114 |
Q |
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| T |
35015751 |
aaatgtatgttcgatattacggtggatgtgtcagaatcacaatgacctatcataattttgcagaaactacaaagtgtagcttttagacaatcacgataga |
35015850 |
T |
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| Q |
115 |
tcactgtaattctaagacactcaccatagtaccgaacacaggct |
158 |
Q |
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| T |
35015851 |
tcactgtaattctaagacactcaccatagtaccgaacacaggct |
35015894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 33944753 - 33944860
Alignment:
| Q |
18 |
tgtatgttcgatattacggtggatgtgtcaaaatcacaatgacctatcataattttgcagaaactacaaagtgtagcttttagacaatcacgatggatca |
117 |
Q |
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| T |
33944753 |
tgtatgtttgatatcacggtggatgtgttagaatcacggtgatccatcgtgattttgcagaagctgcaaagtttagcttttaaagaatcacgatggatca |
33944852 |
T |
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| Q |
118 |
ctgtaatt |
125 |
Q |
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| T |
33944853 |
ccgtaatt |
33944860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 43049474 - 43049423
Alignment:
| Q |
69 |
attttgcagaaactacaaagtgtagcttttagacaatcacgatggatcactg |
120 |
Q |
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| T |
43049474 |
attttgcagaagctacaaagtgtagcttttaaaaaatcacgatggatcactg |
43049423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 34039010 - 34039058
Alignment:
| Q |
69 |
attttgcagaaactacaaagtgtagcttttagacaatcacgatggatca |
117 |
Q |
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| T |
34039010 |
attttgcagaagctacaaagtgtagcttttaggaaatcacaatggatca |
34039058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 4795169 - 4795111
Alignment:
| Q |
69 |
attttgcagaaactacaaagtgtagcttttagacaatcacgatggatcactgtaattct |
127 |
Q |
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|||||||| |||||||||||||||||||||| | ||| ||| |||||||| || ||||| |
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| T |
4795169 |
attttgcataaactacaaagtgtagcttttataaaattacggtggatcaccgtgattct |
4795111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 39887691 - 39887651
Alignment:
| Q |
69 |
attttgcagaaactacaaagtgtagcttttagacaatcacg |
109 |
Q |
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||||||||||| |||||||||||||||||| || ||||||| |
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| T |
39887691 |
attttgcagaagctacaaagtgtagcttttggaaaatcacg |
39887651 |
T |
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