View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_12 (Length: 407)
Name: NF2683_high_12
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 15396044 - 15395668
Alignment:
| Q |
7 |
tcgaacaatataggtctcccaattcttgatttgaatcacgatttgataactatgctcaaacagaaatttcgatgtagagtgtgacagatataacaaacct |
106 |
Q |
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| T |
15396044 |
tcgaaaaaaataggtctcccaattcttgatttgaatcacgatttgataactatgctcaaacagaaatttcgatgtagagtgtga--gatataacaaacct |
15395947 |
T |
|
| Q |
107 |
ggaatacaacggtaaaacacatcttgtgaatgatgcaagttattcaccagatatgcagcctgtccagaatatgctaaaagaaggcaaggaaacaccacga |
206 |
Q |
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| T |
15395946 |
ggaatacaacggtaaaacacatcttgtgaatgatgcaagttattcaccagatatgcagcctgtccagaatatgctaaaagaaggcaaggaaacaccacga |
15395847 |
T |
|
| Q |
207 |
gagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccctgaaagcaatcatcacaagttttcgattttgaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395846 |
gagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccctgaaagcaatcatcacaagttttcgattttgaa |
15395747 |
T |
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| Q |
307 |
ttaaccgtttaccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaacaaacctgttatgct |
385 |
Q |
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| T |
15395746 |
ttaacctttttccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaacaaacctgttatgct |
15395668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 86 - 385
Target Start/End: Complemental strand, 15387593 - 15387294
Alignment:
| Q |
86 |
tgtgacagatataacaaacctggaatacaacggtaaaacacatcttgtgaatgatgcaagttattcaccagatatgcagcctgtccagaatatgctaaaa |
185 |
Q |
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| T |
15387593 |
tgtgacagatataacaaacctggaatagaacggtaaaacacatcttgtgaatgatgcaagttattcaccagatatgcagcctgtccagaatatgctaaaa |
15387494 |
T |
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| Q |
186 |
gaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccctgaaagcaatca |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387493 |
gaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccctgaaagcaatca |
15387394 |
T |
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| Q |
286 |
tcacaagttttcgattttgaattaaccgtttaccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaacaaacctgttatgct |
385 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387393 |
tcacaagttttcgattttgaattaaccatttgccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaacaaacctgttatgct |
15387294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 102 - 274
Target Start/End: Original strand, 38667149 - 38667321
Alignment:
| Q |
102 |
aacctggaatacaacggtaaaacacatcttgtgaatgatgcaagttattcaccagatatgcagcctgtccagaatatgctaaaagaaggcaaggaaacac |
201 |
Q |
| |
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||||||||||| |||| ||||| |||||| ||||||| ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
38667149 |
aacctggaatagaacgataaaaagcatcttttgaatgagtcaagttattcataaggtatgcagcttgtccagaataggctaaaagaaggcagggaaacac |
38667248 |
T |
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| Q |
202 |
cacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccct |
274 |
Q |
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|| ||||||||||||| ||||||| ||| || ||||||| | || |||||| |||||||| || |||||| |
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| T |
38667249 |
aaccagagtaaatgcaagctgtacagctgagaccggaaaatgagataggtcggcgaaaagagcctccgtccct |
38667321 |
T |
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