View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_15 (Length: 397)
Name: NF2683_high_15
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 39 - 378
Target Start/End: Complemental strand, 28156053 - 28155709
Alignment:
| Q |
39 |
agctagtaattaggtgtatgttgtagctaatttggtttttgttaacaataagctattgttaatttgtgtggaagatatcgaaattgtttaatgcatgtgg |
138 |
Q |
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| T |
28156053 |
agctagtaattaggtgtatgtttaagctaatttggtttttgttaacaataagctattgttaatttgtgtggaagatatcgaaattgtttaatgcatgtgg |
28155954 |
T |
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| Q |
139 |
ttgggtaggggttgatttgattcacctacttaactcttgagatctacaattggtagttgcttcttcacattttgattcattgagcagaacat-------- |
230 |
Q |
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| T |
28155953 |
ttgggtaggggttgatttgattcacctacttaactcttgagatctacaattggtagttgcttcttcacattttgattcattgagcagaacattattggca |
28155854 |
T |
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| Q |
231 |
--------tgtgtgaggcaatgagtccatgaaaatggaaacacttactgtggttaaagtggtttggtttggttaatgttggtttctccaaactgttctgt |
322 |
Q |
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| T |
28155853 |
tggaagtgtatgtgaggcaatgagtccatgaaaatggagacacttactgtggttaaag-----tggtttggttaatgttggtttctcgaaa-----ctgt |
28155764 |
T |
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| Q |
323 |
tcattcaggttttgcaaaactcacggacacaagtggcagaactctcacgtgaaatc |
378 |
Q |
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| T |
28155763 |
tcattcgggttttgcaaaactcacggacac-agtggcagaactctcacgtgaaatc |
28155709 |
T |
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