View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_16 (Length: 392)
Name: NF2683_high_16
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 41765387 - 41765749
Alignment:
| Q |
18 |
caaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagaggaattcaagccagtaaaagatgtatctattccagaaatcaatgttcg |
117 |
Q |
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| T |
41765387 |
caaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagagggattcaagccagtaaaagatgtatctattccagaaatcaatgttcg |
41765486 |
T |
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| Q |
118 |
aaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaatgtt |
217 |
Q |
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| T |
41765487 |
aaccggcataattgatgatcttcttggcggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaatgtt |
41765586 |
T |
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| Q |
218 |
ctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
41765587 |
ctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgctatgttgagaaaaagcaagtttt |
41765686 |
T |
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| Q |
318 |
gtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
380 |
Q |
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| T |
41765687 |
gtctttgtcctagtgggtgggaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
41765749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 41757304 - 41757666
Alignment:
| Q |
18 |
caaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagaggaattcaagccagtaaaagatgtatctattccagaaatcaatgttcg |
117 |
Q |
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||||||||||||| ||||| || || ||| |||||||||| ||||| ||||||| ||||||||| | ||| ||||||||||||||||||| |||| ||| |
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| T |
41757304 |
caaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagagggattcaagcctgcaaaggatgtatctattccagaaaccaatcttca |
41757403 |
T |
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| Q |
118 |
aaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaatgtt |
217 |
Q |
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|||||| | ||| ||| | || |||| || ||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| ||||| |||| |
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| T |
41757404 |
aaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttaggcctgtt |
41757503 |
T |
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| Q |
218 |
ctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttct |
317 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41757504 |
ctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttaagaaaaagcaagttct |
41757603 |
T |
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| Q |
318 |
gtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
380 |
Q |
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| T |
41757604 |
gtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
41757666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 354
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
| Q |
258 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag |
354 |
Q |
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|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || |||||||| |
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| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag |
26973139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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