View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_2 (Length: 652)
Name: NF2683_high_2
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 90 - 477
Target Start/End: Complemental strand, 4440709 - 4440322
Alignment:
| Q |
90 |
ttacaataccgtcactcacatcgtctatgttagtaggagcacttttaacaggcctgtatttgttgtatttacttagtctaaagaattagataggatgtta |
189 |
Q |
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| T |
4440709 |
ttacaataccgtcactcaatttgtctatgttagtaggtgcacttataacaggcctgaatttgttgaatttaatttgtctaaagaattagataggatgtta |
4440610 |
T |
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| Q |
190 |
attgttcctggcataatagcattggcaacaagagaagcaatagtactacaaagttccaataggggggagaaatgcattgctttccaatgttcctcaaatg |
289 |
Q |
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| T |
4440609 |
attattcctggcacaatagcattggcaacaagagaagcaataatcctacaaagttccaatagggtggagaaatgcattgctttccaatgttcctcaaatg |
4440510 |
T |
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| Q |
290 |
attctcaaatgaagggacttgcctcctaagcatggcagtgtggtacatagaagttttctgctaatattgatgtgtttgtggtcgttcatgtcacagatct |
389 |
Q |
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| T |
4440509 |
attctcaaatgaagggacttgcctcctaagcatggcagtgtggtacatagaagttttctgctaatattgatgtgtttgtggtcgttcatgtcacagatct |
4440410 |
T |
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| Q |
390 |
tgcatgggagtttactaaggtctactcaagagcaattcttatcatctatagggacaaggatgcttaaaagagagggaattttaatagg |
477 |
Q |
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| T |
4440409 |
tgcatgggagtttactaagatctactcaagagcaattcttatcatctttagggacaaggatgcttaaaagagagggaattttaatagg |
4440322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 581 - 635
Target Start/End: Complemental strand, 4440218 - 4440164
Alignment:
| Q |
581 |
gagtgcctcatttgcaatctaacatttcaacaattatctcattctctctaaaact |
635 |
Q |
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| T |
4440218 |
gagtgcctcatttgcaatctaacatttcaacaattatctgattctctctaaaact |
4440164 |
T |
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