View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2683_high_21 (Length: 348)
Name: NF2683_high_21
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 3364362 - 3364029
Alignment:
| Q |
1 |
caatcactcaaaatttggcataccattgaaagtttagctttaagtcgtgataaccttaaatgtcataaaccgtaatatataaaatgacgatttgactnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3364362 |
caatcactcaaaatttggcataccattgaaagtttagctttaagtcgtgataaccttaaatgtcataaaccgtaatatataaaatgacgatttgactaaa |
3364263 |
T |
|
| Q |
101 |
nnnn-gaacataagattatgatttcaggagaataaaaataactatgaagagttttccacattgtaaataacttcagcttgtctcgacgcccttttgaatc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3364262 |
aaaaagaacataagattatgatttcaggagaataaaaataactatgaagagttttccacattgtaaataacttcagcttgtctcgacgcccttttgaatc |
3364163 |
T |
|
| Q |
200 |
aaaccagttctgtcaataacaccggtttcgcgtttagatcaggcaccacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatc |
299 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
3364162 |
gaaccagttctgtcaataactccggtttcgcgtttagatcaggctccacaatcatcttttctagtacaggagaatataaaagcagaaatctgataaaatc |
3364063 |
T |
|
| Q |
300 |
taattcagatttaaagccagagatgccatgcatc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
3364062 |
taattcagatttaaagccagagatgccatgcatc |
3364029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 3342776 - 3342700
Alignment:
| Q |
252 |
catcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagatttaaagccagagatgccat |
328 |
Q |
| |
|
|||||||||||| || ||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
3342776 |
catcttttctagatcaggagaatatagaagtagaaattggataaaatctaattcagatttggtaccagagatgccat |
3342700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 2947192 - 2947266
Alignment:
| Q |
237 |
atcaggcaccacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagattt |
311 |
Q |
| |
|
||||||| ||||||||| ||||||||| | |||||| || ||| |||||| |||||||||||||||||||||| |
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| T |
2947192 |
atcaggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagattt |
2947266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 4333570 - 4333632
Alignment:
| Q |
246 |
cacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcaga |
308 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||| |||||| |||| |||| ||||||||| |
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|
| T |
4333570 |
cacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaattcaga |
4333632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 1794187 - 1794136
Alignment:
| Q |
258 |
ttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagat |
309 |
Q |
| |
|
|||||| ||| ||||||||| ||| |||||| |||||||||||||||||||| |
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|
| T |
1794187 |
ttctaggacaggagaatatagaagtagaaatctgataaaatctaattcagat |
1794136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 2007988 - 2007913
Alignment:
| Q |
251 |
tcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagatttaaagccagagatgcc |
326 |
Q |
| |
|
||||||||||||| ||| | |||| | ||| |||||| | |||||||||||||||||||| | |||||||||||| |
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| T |
2007988 |
tcatcttttctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgcc |
2007913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 20936239 - 20936180
Alignment:
| Q |
246 |
cacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattc |
305 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
20936239 |
cacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattc |
20936180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 39275381 - 39275300
Alignment:
| Q |
246 |
cacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagatttaaagccagagatgcca |
327 |
Q |
| |
|
||||||||| |||||||| | | ||||||| | || ||||||||||||||||||||||||||||| | ||||| ||||||| |
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| T |
39275381 |
cacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgcca |
39275300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 20924636 - 20924564
Alignment:
| Q |
239 |
caggcaccacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagattt |
311 |
Q |
| |
|
||||| ||||||||||||||| || ||| | ||||| | ||| |||||| |||||||||||||||||||||| |
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| T |
20924636 |
caggctccacaatcatctttttgagcacaggtgaatagagaagtagaaatctgataaaatctaattcagattt |
20924564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 20954475 - 20954421
Alignment:
| Q |
251 |
tcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattc |
305 |
Q |
| |
|
||||||||||||| | ||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
20954475 |
tcatcttttctagcatgggagaatatagaagtagaaatttgataaaatctaattc |
20954421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 21239140 - 21239087
Alignment:
| Q |
125 |
aggagaataaaaataactatgaagagttttccacattgtaaataacttcagctt |
178 |
Q |
| |
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|||| ||||||| | | |||||||||| |||||||| ||||||||||||||||| |
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| T |
21239140 |
aggataataaaattcattatgaagagtcttccacatggtaaataacttcagctt |
21239087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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